Projects in OSG Connect

 

The following projects are defined in OSG Connect. You may click on a project's name to request membership.

Project NameDescription
AlGDock Project Name: Binding Potential of Mean Force Calculations with Alchemical Interaction Grids
Short Project Name: AlGDock
Field of Science: Biophysics
PI Name: David Minh
PI Email: dminh@iit.edu
PI Organization: Illinois Institute of Technology
PI Department: Chemistry
Join Date: 10 Jan, 2014
Project Contact: David Minh
Project Contact Email: dminh@iit.edu
Telephone Number: 312-567-3411

Standard binding free energies are frequently sought in drug design. According to implicit ligand theory, standard binding free energies can be determined from binding potential of mean force (PMF) calculations from different receptor structures. Binding PMFs are a special type of binding free energy in which the receptor is rigid. The purpose of this project is to develop methods for estimating binding PMFs.

ConnectTrain Project Name: Connect Training
Field of Science: Multidisciplinary
PI Name: Rob Gardner
PI Email: rwg@hep.uchicago.edu
Organization: University of Chicago
Department: CI
Join Date: August 20, 2013
Sponsor: OSG Connect
OSG Contact: Rob Gardner
Project Contact:
Telephone:

OSG Connect training activity.

DBConcepts Project Name: Database Concepts
Short Project Name: DBConcepts
Field of Science: Digital Humanities/English Literature
PI Name: Richard Jean So
PI Email: richardjeanso@uchicago.edu
PI Organization: University of Chicago
PI Department: English & American Literature
Join Date: 5 Feb 2014
Project Contact: Monica Lee
Project Contact Email: monicalee@uchicago.edu
Telephone Number: 630-415-4546
Project Description: We're conducting a network analysis of a 10% sample (1.6TB; 3.6m files) of the Google Books corpus.

UChicago-RCC Project Name: UChicago-RCC
Field of Science: Multidisciplinary
PI Name: Birali Runesha
PI Email: runesha@uchicago.edu
Organization: University of Chicago
Department: Research Computing Center
Join Date: September 16, 2013
Project Description: Various research projects

PlantBio Project Name: PlantBio
Field of Science: Plant Biology
PI Name: Joy Bergelson
PI Email: jbergels@uchicago.edu
Organization: University of Chicago
Department: Ecology and Evolution
Join Date: September 25, 2013
Project Contact: Madlen Vetter
Project Description: Investigation of plant-pathogen interactions using genome-wide association mapping. Typical workflow consists in execution of R scripts. (http://bergelson.uchicago.edu/)

ExhaustiveSearch Project Name: ExhaustiveSearch
Short Project Name: ExhaustiveSearch
Field of Science: Bioinformatics
PI Name: Sam Volchenboum
PI Email: slv@uchicago.edu
PI Organization: University of Chicago
PI Department: CI
Join Date: Mar 28, 2014
Project Description: ExhaustiveSearch (or ExSearch) is a machine learning application tuned to analyze class-labeled data using n-tuple feature vectors.

HealthInformatics Project Name: Health Informatics
Field of Science: Biomedical Research
PI Name: Karl Jablonowski
PI Email: kdj6@uw.edu
Organization: University of Washington
Department: Biomedical and Health Informatics
Join Date: October 20, 2013
Project Description: My research focuses on detecting patterns in physiological data of patients in an Intensive Care Unit setting, with the aim of constructing an early warning system. The approach I am taking includes machine learning algorithms such as Artificial Neural Networks, Hidden Markov Models, and Support Vector Machines. I presently have limited computational resources for which to conduct this research. The data I am using for training and validation is both static and time based information on 32,000 patients and includes approximately 30GB of raw data. Additionally I have extremely high resolution data on 2,600 patient. The search-space is prohibitively large for a single computer and even some of the smaller clusters.

I am employing an optimization methodology which allows for a differential evolution approach to incrementally improve a structurally adaptive model. The methodology allows for parallel programming which is of course a necessity for distributed computing.

KnowledgeLab Project Name: Knowledge Lab
Short Project Name: KnowledgeLab
Field of Science: Multidisciplinary
Field of Science (if Other): Social Science
PI Name: James Evans
PI Email: jevans@uchicago.edu
PI Organization: CI
PI Department: Sociology
Join Date: March 18, 2014
Project Contact: Aaron Gerow
Project Contact Email: gerow@uchicago.edu
Project Description: Knowledge Lab / CI

HTCC Project Name: HTC Challenge
Short Project Name: HTCC
Field of Science: Community Grid
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: Research Technologies
Join Date: 2 April 2014
Project Contact: Rob Quick
Project Contact Email: rquick@iu.edu
Telephone Number: 317-695-3276
OIM: https://oim.grid.iu.edu/oim/project?id=67
HTC Challenge Project for AHM 2014. May be sustained for future challenges.

OSG-Staff Project Name: OSG-Staff
Field of Science: Computer Science
PI Name: Chander Sehgal
Organization: Fermi Lab
Project Description: Integration and testing of science applications for new users



MedInf Project Name: Medical Informatics
Short Project Name: MedInf
Field of Science: Computer Science
PI Name: Alex Langerman
PI Email: alangerm@surgery.bsd.uchicago.edu
PI Organization: UChicago Medicine
PI Department: Otolaryngology
Join Date: 7 Oct 2014
Project Contact: Brian Mitchell
Project Contact Email: bamitchell@uchicago.edu
Telephone Number: 847-757-7184
Project Description: Analysis of modern surgery presents many interesting computational challenges. The problems of access to data, data analysis, and interpretation of said analysis all present fundamental, unsolved difficulties to those in medical informatics. The focus of this project primarily involves data analysis where operations are still typically thought of holistically and conceptually, rather than algorithmically. This work is an attempt to change that by properly defining surgical procedures in a manner conducive to both education and analysis.

MS-EinDRC Project Name: Mt. Sinai-Einstein DRC
Short Project Name: MS-EinDRC
Field of Science: Biochemistry
PI Name: Jeffery Pessin
PI Email: jeffery.pessin@einstein.yu.edu
PI Organization: Albert Einstein College of Medicine
PI Department: Endocrinology
Join Date: Dec 23, 2014
Project Contact: Jacob Pessin
Project Contact Email: jacob.pessin@einstein.yu.edu
Telephone Number: 718 839 7228
Project Description: For modeling and other computational projects of the Mt. Sinai-Einstein DRC and affiliates, primarily structurally related protein Modeling and Docking.

RADICAL Project Name: RADICAL: SAGA / BigJob
Short Project Name: RADICAL
Field of Science: Computer Science
PI Name: Shantenu Jha
PI Email: shantenu.jha@rutgers.edu
PI Organization: Rutgers University
PI Department: Computer Science
Join Date: 25 Nov 2013
Project Contact: Ole Weidner
Project Contact Email: ole.weidner@rutgers.edu
Telephone Number:
Project Description: OSG / XSEDE interoperability and Python APIs for OSG / Condor / iRODS.

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Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
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Join-Date = February 12, 2015
Sponsor =
OSG-Sponsor-Contact =

SNOplus Project Name: SNO+ Group at Chicago
Short Project Name: snoplus
Field of Science: Neutrino Physics
PI Name: Ed Blucher
PI Email: blucher@hep.uchicago.edu
PI Organization: University of Chicago
PI Department: Department of Physics
Join Date: 2013 (Approx)
Project Contact: Kevin Labe
Project Contact Email: klabe@uchicago.edu
Telephone Number: (773) 702-5983
Project Description: Monte Carlo production and data analysis for the snoplus neutrino physics experiment.

KnowledgeSys Project Name: Knowledge Systems
Field of Science: Knowledge Models and Cognitive Systems
PI Name: Michael J. Culbertson
PI Email: culbert1@illinois.edu
Organization: University of Illinois, Urbana-Champaign
Department: Educational Psychology
Join Date: September 16, 2013
Project Description: In educational assessment, several questions must be answered when constructing a test, such as "How many items are necessary for adequate knowledge measurement precision?", "How many field-test students are needed to adequately calibrate model parameters?", or "Which computerized adaptive testing (CAT) algorithm performs best?" For complex non-linear models, these questions are typically approached by simulation: Model parameters are calibrated (as if unknown) from simulated student item responses, or the emergent properties of particular CAT algorithms are investigated with a large number of simulated test takers. Since the design space grows quickly, many simulations are necessary to understand general trends.

Simulations throughout the test design space can be run independently, requiring little coordination between cores. Computations generally do not have high memory requirements or unusual library/code dependencies, and computations can be recovered from checkpoints easily. The large number of simulations suggests parallel computing, but the independence allows an asynchronous, distributed environment, such as OSG.

SouthPoleTelescope Project Name: South Pole Telescope
Field of Science: Astrophysics
PI Name: John Carlstrom
PI Email: jc@kicp.uchicago.edu
Organization: University of Chicago
Department: Astrophysics
Join Date: 10 November 2014
Sponsor: UChicago CI Connect
OSG Contact: Rob Gardner
Project Contact:
Telephone:

The South Pole Telescope (or SPT) is a new telescope deployed at the South Pole that is designed to study the Cosmic Microwave background. Constructed between November 2006 and February 2007, the SPT is the largest telescope ever deployed at the South Pole. This telescope provides astronomers a powerful new tool to explore dark energy, the mysterious phenomena that may be causing the universe to accelerate.

Publications:
1 http://arxiv.org/abs/1212.6267
2. http://arxiv.org/abs/1210.7231


NRELMatDB Project Name: NREL Materials Database
Field of Science: Materials Science
PI Name: Peter Graf
PI Email: peter.graf@nrel.gov
Organization: NREL - National Renewable Energy Laboratory, Golden CO
Department: Computational Science Center
Join Date: September 30, 2013
Project Contact: Steve Sullivan, stephen.sullivan@nrel.gov
Telephone: 303-275-3757
Project Description: Ab initio calculation of the physical properties of 10^4 to 10^6 materials, database of results, and web site for access.

aprime Project Name: massive photon detection simulations
Short Project Name: aprime
Field of Science: Astro-particle Physics
PI Name: Jan Balewski
PI Email: balewski@mit.edu
PI Organization: Massachusetts Institute of Technology
PI Department: LNS
Join Date: 8 April 2014
Project Description: DarkLight experiment planned to run at Jefferson LAB in the upcoming years will search for a massive photon
possibly produced in interaction of an electron with electric filed of a proton. Monte-Carlo simulations are needed design and optimize the Darklight experiment. The initial OSG-Connect resources of few CPU years
will be sufficient. The simulation will use CERN libraries, namely: Geant4.10, root5.34, compiled on Scientific Linux 6.5.

scicomp-analytics Project Name: Scientific Computation Analytics
Short Project Name: scicompanalytics
Field of Science: Other
Field of Science (if Other): Data Science
PI Name: Robert Gardner
PI Email: rwg@uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: Jun 13, 2014
Project Description: Development of collection, aggregation, filtering and analysis of probes and metrics as related to distributed computation on the Open Science Grid.

albany State University of New York at Albany ATLAS team

CompChem Project Name: Computational Chemistry
Field of Science: Chemistry
PI Name: Chaoren Liu
PI Email: chaoren.liu@duke.edu
Organization: Duke University
Department: Chemistry
Join Date: August 27, 2013
Project Description: Molecule modeling and simulation.

campus Project Name: uchicago.campus
Field of Science: Multidisciplinary
PI Name: Rob Gardner
PI Email: rwg@hep.uchicago.edu
Organization: University of Chicago
Department: Computation Institute
Join Date: 10 November, 2014
Sponsor: UChicago Connect
OSG Contact: Rob Gardner
Project Contact:
Telephone:

UChicago CI Connect training activity.

CentaurSim Project Name: CentaurSim
Short Project Name: CentaurSim
Field of Science: Astrophysics
PI Name: Nathan Kaib
PI Email: nathan.kaib@northwestern.edu
PI Organization: Northwestern University
PI Department: Physics and Astronomy
Join Date: 14 Aug 2014
Project Contact: Nathan Kaib
Project Contact Email: nathan.kaib@northwestern.edu
Telephone Number: 4402909387
Porject Description: Centaurs are icy objects in the outer solar system whose orbits cross those of the giant planets. It is thought that most Centaurs originate from the solar system's Kuiper Belt, a reservoir of icy bodies orbiting just beyond Neptune. However, a few Centaurs with very large orbital inclinations and/or mean orbital distances cannot be well-explained with a Kuiper Belt origin. Alternatively, it has been proposed that these outlier Cenaturs may come from the Oort Cloud, a spherical halo of icy objects that extends over halfway to the nearest star. In this project we will simulate the production of Centaurs from the Oort Cloud using numerical orbital integrations. Following this, we will run our simulated orbits/objects through a sky survey simulator to compare our simulated "detections" with the real sample of known objects. Thus, we will be able to evaluate whether the Oort Cloud is a potential source of Centaurs with extreme orbits.

umich The University of Michigan CI Connect campus grid.

OIM campus grid detail: https://oim.grid.iu.edu/oim/campusgrid?id=17.

TAMUpheno

Project Name: TAMU LHC phenomenological studies
Short Project Name: TAMUpheno
Field of Science: High Energy Physics
PI Name: Bhaskar Dutta
PI Email: dutta@physics.tamu.edu
PI Organization: Texas A&M University
PI Department: Department of Physics & Astronomy
Join Date: Oct 13, 2014
Project Contact: Tathagata Ghosh
Project Contact Email: ghoshtatha@physics.tamu.edu
Telephone Number: (979)402-3929
Project Description: The Large Hadron Collider (LHC) experiments have successfully discovered the last missing piece of the standard model (SM)--the elusive Higgs boson. However, no sign of any physics beyond the SM has been observed yet. Although the standard model has been extremely effective, many unsolved questions still remain.
The focus of our group is to study models of physics beyond the SM, which tries solve the aforementioned unsolved questions, and explore their possible signatures, at LHC experiments predominately. These models include Supersymmetric models, Grand Unified Theories, Left-Right Symmetric models and various Dark Matter models.
LHC is going through an upgrade now and it will start functioning again next year with increased energy. We are pursuing a number of projects trying to predict the possible signature of new physics, pertaining to various models described above, in upcoming LHC experiments. Owing to these we need sufficient comuting power and intend to run collider simulators including MadGraph, Pythia, PGS, Delphes etc.

IceCube Project Name: IceCube South Pole Neutrino Observatory
Short Project Name: icecube
Field of Science: Astro-particle Physics
PI Name: Francis Halzen
PI Email: francis.halzen@icecube.wisc.edu
PI Organization: University of Wisconsin Madison
PI Department: Physics
Join Date: 2 June 2014
Project Contact: Gonzalo Merino
Project Contact Email: gonzalo.merino@icecube.wisc.edu
Telephone Number: 6085098515

IceCube is the world's largest neutrino detector. It is located at the South Pole and includes a cubic kilometer of instrumented ice. IceCube searches for neutrinos from the most violent astrophysical sources: events like exploding stars, gamma ray bursts, and cataclysmic phenomena involving black holes and neutron stars. The IceCube telescope is a powerful tool to search for dark matter, and could reveal the new physical processes associated with the enigmatic origin of the highest energy particles in nature. In addition, exploring the background of neutrinos produced in the atmosphere, IceCube studies the neutrinos themselves; their energies far exceed those produced by accelerator beams.

qmc Project Name: Quantum Monte Carlo Calculations for Small Molecules
Short Project Name: QMC
Field of Science: Physical Chemistry
PI Name: Richard Dawes
PI Email: dawesr@mst.edu
PI Organization: Missouri University of Science and Technology
PI Department: Chemistry
Join Date: Jan 12, 2015
Project Contact: Andrew Powell
Project Contact Email: adpkd6@mst.edu
Telephone Number: (573) 341-4451
Project Description: Our project uses Quantum Monte Carlo (QMC) methods for energy calculations on molecular systems of interest.

BioMolMach Project Name: Biomolecular Machines
Short Project Name: BioMolMach
Field of Science: Biophysics
PI Name: Benoit Roux
PI Email: roux@uchicago.edu
PI Organization: University of Chicago
PI Department: Biological Sciences
Join Date: July 7, 2014
Telephone Number: (773) 834-3557
Project Description: The molecular machines associated with biological membranes are particularly remarkable. Membrane-associated proteins play an essential role in controlling the bidirectional flow of material and information, and as such, they are truly devices able to accomplish complex tasks. These include ion channels, transporters, pumps, receptors, kinases, and phosphatases.
These proteins, like any machine, need to change shape and visit many conformational states to perform their function. Our project is aimed at gaining a deep mechanistic perspective of such protein function, linking structure to dynamics, by characterizing the free energy landscape that governs the key functional motions.

WaterCrystal Project Name: Water structure in protein crystals
Short Project Name: duke.WaterCrystal
Field of Science: Physical Chemistry
PI Name: Patrick Charbonneau
PI Email: patrick.charbonneau@duke.edu
PI Organization: Duke University
PI Department: Chemistry
Join Date: 15 July 2014
Sponsor: Duke CI Connect
OSG Sponsor Contact: SCSC
Project Contact: Diana Fusco
Project Contact Email: diana.fusco@duke.edu
Telephone Number: (919) 613-6261

We propose a total of 400 independent molecular dynamics (MD) simulations that sample the structure of water in protein crystals, in order to characterize the water behavior in this conditions and develop models to improve protein structural refinement. The simulations will be run using Gromacs.

velev Project Name: Velev research group
Short Project Name: velev
Field of Science: Computational Condensed Matter Physics
PI Name: Julian Velev
PI Email: jvelev@gmail.com
PI Organization: University of Puerto Rico
PI Department: Department of Physics
Join Date: July 15, 2014
Project Contact: Julian Velev
Project Contact Email: jvelev@gmail.com
Telephone Number: 787-396-1798
Project Description: Electronic structure of solids. Electron and spin transport in nanoscale devices.

PathSpaceHMC Project Name: Path Space Hybrid Monte-Carlo
Field of Science: Computational Condensed Matter Physics
PI Name: Frank Pinski
PI Email: frank.pinski@uc.edu
Organization: University of Cincinnati
Department: Physics
Join Date: September 2013
Project Contact: Patrick Malsom
Project Description: The goal of this research is to develop a computational tool that can uncover the pathway and the transition states that exist when a molecule changes conformation or when it chemically changes. In many such circumstances, a process must overcome an energy barrier before proceeding to completion. If the size of the barrier is large compared to the available thermal energy, a process must rely on the occurrence of one or more rare events. For such circumstances, one would like to understand the reaction pathways so as to improve yields, or as in the case of protein folding, to understand the intermediate states. Many simple processes have been explored using theoretical tools such as molecular dynamics, where the movements of individual atoms are calculated. However, when the barrier is large, crossing the relevant barrier is indeed a very rare event. Although computer speeds have been doubling every 18 months (a consequence of Moore's law), the exponentially long waiting times necessary for barrier hopping pushes the required computational effort out of the feasibility range for all but the simplest models. To explore these barrier-limited processes, we are developing a novel computational technique to sample the paths themselves in a thermodynamically significant manner.

mab Project Name:Multi Armed Bandits new approaches
Short Project Name: mab
Field of Science: Information Theory
PI Name: Vivek Farias
PI Email: vivekf@mit.edu
PI Organization: Massachusetts Institute of Technology
PI Department: Sloan School of Management
Join Date: Oct 21, 2015
Project Contact: gutin@mit.edu
Project Contact Email: gutin@mit.edu
Telephone Number: 6172304144
Project Description: Developing new policies for the (classical) Multi-Armed Bandit problem.


atlas

Anchor project for ATLAS Connect.

Swift Project Name: Swift
Field of Science: Computer Science
PI Name: Michael Wilde
PI Email: wilde@mcs.anl.gov
Organization: University of Chicago
Department: Computation Institute
Join Date: August 2013
Project Description: The Swift parallel scripting language development team.

connect CI Connect offers users simple access to distributed high throughput computing resources — which may be comprised of campus grids, cloud services, and the national-scale resources of the Open Science Grid — using only your home campus identity. We provide login services through which you may create and submit jobs to campus clusters, cloud resources, or to the Open Science Grid. In addition, administrators of campus grids can extend their existing resources by bridging through OSG Connect.

To apply for OSG Connect access, join this group and find projects with which you're affiliated by clicking on the "SubGroups" tab above. If you're the PI of a project that doesn't yet appear, please see our information on creating a new project.

For information on creating a hosted job submission and data service for your campus, contact us at support@ci-connect.net.

ContinuousIntegration Project Name: Continuous Integration
Short Project Name: ContinuousIntegration
Field of Science: Technology
PI Name: Rob Gardner
PI Email: rwg@uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: July 16, 2014
Telephone Number: 7732411697
Project Description: Continuous Integration and Testing for OSG Connect tutorials and services.

SWC-OSG-UC14 Project-Name = SWC-OSG-UC14
Project-Name = SWC-OSG-UC14
Field-of-Science = Education
PI-Name = Robert Gardner
PI-Email = rwg@uchicago.edu
Join-Date = Dec 13, 2014
Project Description: Joint OSG and Software Carpentry Workshop at University of Chicago, December 15-17th 2014


uchicago The University of Chicago CI Connect campus grid

OIM campus grid detail: https://oim.grid.iu.edu/oim/campusgrid?id=11.

LIGO Project Name: Laser Interferometer Gravitational-Wave Observatory
Short Project Name: LIGO
Field of Science: Gravitational Physics
PI Name: Duncan Brown
PI Email: dabrown@physics.syr.edu, pfcouvar@syr.edu
PI Organization: Syracuse University
PI Department: Physics
Join Date: 6 Oct, 2014
Project Contact: Peter Couvares
Project Contact Email: pfcouvar@syr.edu
Telephone Number: (315) 443-5962

gem5 Project Name:Computer microarchitecure research
Short Project Name:gem5
Field of Science: Computer Science
PI Name: Dean Tullsen
PI Email: tullsen@cs.ucsd.edu
PI Organization: University of California San Diego
PI Department: Computer Science and Engineering
Join Date: Feb 23, 2015
Project Contact: Wasmundt
Project Contact Email: wasmundt@eng.ucsd.edu
Telephone Number: 6082178683
Project Description: The work is looking into microarchitectural details utilizing gem5 to do cycle-accurate simulation of an O3 processor. The work additionally uses McPAT and Hotspot to flush out the research framework.

QEvolBiol Project Name: Quantitative Evolutionary Biology
Short Project Name: QEvolBiol
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Jeremy Van Cleve
PI Email: jvancleve@uky.edu
PI Organization: University of Kentucky
PI Department: Biology
Join Date: Sept 22, 2015
Project Contact: Jeremy Van Cleve
Project Contact Email: jvancleve@uky.edu
Telephone Number: 8592183020
Project Description: Quantitative approaches to evolutionary biology including numerical analysis of mathematical models of evolutionary change and individually-based simulations of population dynamics, mutation, natural selection, and other evolutionary forces.


GRASP

Project Name: Relativistic Atomic Structure Calculations
Short Project Name: GRASP
Field of Science: Physics
PI Name: Richard Irving
PI Email: rirving@utnet.utoledo.edu
PI Organization: University of Toledo
PI Department: Physics & Astronomy
Join Date: July 01, 2014
Project Contact Email: rirving@utnet.utoledo.edu
Telephone Number: 419-530-2589
Project Description: Atomic structure calculations based on multiconfiguration Dirac-Hartree-Fock theory utilizing Grasp2k, a general-purpose relativistic atomic structure package.

BioStat Project Name: Bioinformatics and biostatistics for genetic risk factors
Field of Science: Bioinformatics
PI Name: Janice McCarthy
PI Email: janice.mccarthy@duke.edu
Organization: Duke University
Department: Medical Center
Join Date: August 28, 2013
Project Description: Bioinformatics and biostatistics for genetic risk factors at the Duke Medical Center.

Lg-Attenuation Project Name: Lg_attenuation_of_NEChina_and_US
Short Project Name: Lg-Attenuation
Field of Science: Earth Sciences
Field of Science (if Other):
PI Name: Andrea C Gallegos
PI Email: agall@nmsu.edu
PI Organization: New Mexico State University
PI Department: Physics
Join Date: Mar 1, 2016
Project Contact: Andrea C Gallegos
Project Contact Email: agall@nmsu.edu
Telephone Number: 5757600158
Project Description: Determine the attenuation of the regional shear wave Lg for NE China and the contiguous United States using broadband seismograms.



boostconf Project Name: BOOST Conference Data and Analysis
Short Project Name: boostconf
Field of Science: High Energy Physics
PI Name: David W. Miller
PI Email: David.W.Miller@uchicago.edu
PI Organization: University of Chicago
PI Department: Physics
Join Date: Nov 14, 2014
Project Contact: David W. Miller
Project Contact Email: David.W.Miller@uchicago.edu
Telephone Number: 7737027671
Project Description: Project for data sharing and analysis of boosted object physics and jet phenomenology for topics discussed in the BOOST Conference Series

SouthPoleTelescope Project Name: South Pole Telescope
Field of Science: Astrophysics
PI Name: John Carlstrom
PI Email: jc@kicp.uchicago.edu
Organization: University of Chicago
Department: Astrophysics
Join Date: Sept 24, 2013
Project Description: The South Pole Telescope (or SPT) is a new telescope deployed at the South Pole that is designed to study the Cosmic Microwave background. Constructed between November 2006 and February 2007, the SPT is the largest telescope ever deployed at the South Pole. This telescope provides astronomers a powerful new tool to explore dark energy, the mysterious phenomena that may be causing the universe to accelerate.

Publications:
1 http://arxiv.org/abs/1212.6267
2. http://arxiv.org/abs/1210.7231

NeoflAnnot Project Name: Neocalanus flamingeri CV Annotation
Short Project Name: NeoflAnnot
Field of Science: Molecular Biology
Field of Science (if Other): Marine Biology
PI Name: Petra Lenz
PI Email: petra@pbrc.hawaii.edu
PI Organization: University of Hawaii at Manoa
PI Department: Pacific Biosciences Research Center
Join Date: Sept, 22, 2015
Project Contact: Vittoria Roncalli
Project Contact Email: roncalli@hawaii.edu
Telephone Number: 8089566990
Project Description: Generation of a transcriptome for the copepod Neocalanus flamingeri in the gulf of Alaska.


SBGrid Project Name: SBGrid Consortium
Short Project Name: SBGrid
Field of Science: Structural Biology
PI Name: Piotr Sliz
PI Email: sliz@hkl.hms.harvard.edu
PI Organization: Harvard Medical School
PI Department: Biological Chemistry and Molecular Pharmacology
Join Date: 18 April 2014
Project Contact: Ben Eisenbraun
Project Contact Email: bene@hkl.hms.harvard.edu
Telephone Number: 617-432-5608x72
Project Description: High throughput structural biology workflows supported by the SBGrid Consortium.

SbGenome Project Name: Sarcophaga bullata Genome Project
Short Project Name: SbGenome
Field of Science: Bioinformatics
PI Name: Dave Denlinger
PI Email: denlinger.1@osu.edu
PI Organization: The Ohio State University
PI Department: EEOB
Join Date: 26 Aug 2014
Project Contact: Justin Peyton
Project Contact Email: peyton.37@osu.edu
Telephone Number: 614-915-6403
Project Description: The Sarcophaga bullata Genome Project seeks to assemble and annotate the genome of Sarcophaga bullata, an important model for cold tolerance and diapause.

WEST Your Name: Dustin MayfieldJones
Your Email Address: dustin@mayfieldjones.com
Project Name: Water Efficient Sorghum Technologies
Short Project Name: WEST
Field of Science: Botany
Field of Science (if Other):
PI Name: Dr. Andrew Leakey
PI Email: leakey@illinois.edu
PI Organization: University of Illinois Urbana-Champaign
PI Department: Dept of Plant Biology
Join Date: Sept 5, 2017
Project Contact: Dustin MayfieldJones
Project Contact Email: dustin@mayfieldjones.com
Telephone Number: 573-450-8999
Project Description: Phenotyping leaf epidermis by optical tomography and computer vision to evaluate stomatal patterning across natural diversity and transgenic lines of Sorghum and Setaria

swcstaff Project-Name = swcstaff
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = September 22, 2015
Sponsor =
OSG-Sponsor-Contact =

EfficientScore Project Name: Algorithms for Calculating the Efficient Score
Short Project Name: Efficient Score
Field of Science: Other
Field of Science (if Other): Biostatistics
PI Name: Kouros Owzar
PI Email: kouros.owzar@duke.edu
PI Department: Biostatistics and Bioinformatics
Join Date: 14 Aug 2014
Telephone Number: 9196811829

We will benchmark various algorithms to benchmark the efficient score.

nEXO Your Name: Raymond Tsang
Your Email Address: rhmtsang@gmail.com
Project Name: Next Enriched Xenon Observatory
Short Project Name: nEXO
Field of Science: (Please Select)
Field of Science (if Other): Neutrino Physics
PI Name: Raymond Tsang
PI Email: rhmtsang@gmail.com
PI Organization: Pacific Northwest National Laboratory
PI Department: National Security Directorate
Join Date:
Project Contact: Raymond Tsang
Project Contact Email: rhmtsang@gmail.com
Telephone Number: (509) 372-4641
Project Description: The nEXO experiment aims to search for double
beta decay of Xenon-136.

StanfordRCC Project Name: SRCC
Short Project Name: StanfordRCC
Field of Science: Other
Field of Science (if Other): May include different fields of sciences
PI Name: Ruth Marinshaw
PI Email: ruthm@stanford.edu
PI Organization: Stanford University
PI Department: Stanford Research Computing Center
Join Date:
Project Contact: Zhiyong Zhang
Project Contact Email: zyzhang@stanford.edu
Telephone Number: 6508042856

This project is for simulation work in the Stanford research community.
Stanford RCC is the central research computing facility at Stanford.

anl Argonne National Laboratory ATLAS team

EvoTheory Project Name: Linkage disequilibrium's contribution to the maintenance of sexual reproduction
Short Project Name: EvoTheory
Field of Science: Evolutionary Biology
PI Name: Christina Burch
PI Email: cburch@bio.unc.edu
Organization: University of North Carolina
Department: Biology
Join Date: September 18, 2013
Project Contact: Amanda Whitlock
Project Description: Though sexual reproduction is nearly ubiquitous in nature, its costs are substantial. Foremost among these costs are the twofold cost of males and the cost of destroying successful genetic associations. Understanding the paradox of the persistence of sex despite these detriments is a central question in evolutionary theory. In order to persist regardless of these disadvantages, the benefits of sexual reproduction must be substantial - offspring of sexual reproduction must have at least twice the fitness of asexual clones. The most generalizable hypotheses addressing the benefits of sex propose that genetic drift increases linkage disequilibrium, creating a surfeit of genomes with intermediate fitness. Sexual recombination eliminates linkage disequilibrium, thereby increasing genetic variation for fitness and improving the efficiency of natural selection. However, previous research using this framework has failed to address the biological reality of interactions between genes. Because the cost of destroying beneficial genetic interactions is one of the major costs of sex, this cannot be overlooked. In this work, I use a computational gene network model in which genes interact and genetic interactions evolve to investigate the hypothesis that linkage disequilibrium decreases the fitness and adaptability of asexual populations. I test this both by evolving artificial organisms in conditions that will increase linkage disequilibrium, and by evolving them in an environment with a shifting optimum, which will make linkage disequilibrium more costly.

I am running a python script that runs populations of artificial gene networks (numerical matrices) through repeated rounds (on the order of 10s of thousands) of mutation, selection and reproduction, analyzing the evolutionary dynamics of these populations, and storing the data generated by this in text files.

arizona University of Arizona ATLAS team

NESCent Project Name: National Evolutionary Synthesis Center (NESCent)
Field of Science: Evolutionary Sciences
PI Name: Fabricia Nascimento
PI Email: nascimentoff@nescent.org
Organization: Duke University
Department: NESCent Center
Join Date: Auguest 28, 2013
Project Contact: Fabricia Nascimento

About the Center
The National Evolutionary Synthesis Center (NESCent) is a nonprofit science center dedicated to cross-disciplinary research in evolution. NESCent is jointly operated by Duke University, The University of North Carolina at Chapel Hill, and North Carolina State University, and is sponsored by the National Science Foundation.

Our Mission
NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications. NESCent achieves this by supporting research and education across disciplinary, institutional, geographic, and demographic boundaries.

bnl Brookhaven National Laboratory ATLAS team

brandeis Brandeis University ATLAS team

Proteomics Project Name: Proteomics
Short Project Name: Proteomics
Field of Science: Bioinformatics
PI Name: Sam Volchenboum
PI Email: slv@uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: 27 May 2014
Project Contact: Anoop Mayampurath
Project Contact Email: anmayampurath@uchicago.edu
Project Description: Bioinformatics methods for different proteomic applications in life sciences. Algorithm development for improving mass-spectrometry based proteomic techniques.

bu Boston University ATLAS team

Orbiter Project Name: Orbiter -- Classification problems in discrete mathematics
Short Project Name: Orbiter
Field of Science: Mathematics
PI Name: Anton Betten
PI Email: betten@math.colostate.edu
PI Organization: Colorado State University
PI Department: Department of Mathematics
Join Date: 23 May 2014
Telephone Number: 970 491 1865
Project Description: The goal of this project is to create farmed data in the form of classifications of discrete structures from mathematics. This data farm can be used to support discovery of new objects and constructions.

columbia Columbia University ATLAS team

duke Duke University ATLAS team

fresnostate California State University, Fresno ATLAS team

hamptonu Hampton University ATLAS team

harvard Harvard University ATLAS team

iastate Iowa State University ATLAS team

illinois University of Illinois, Urbana-Champaign ATLAS team

PhysStat Project Name: Statistics of Physical Systems
Field of Science: Physics
PI Name: Julian P. Velev
PI Email: jvelev@gmail.com
Organization: University of Puerto Rico
Department: Physics
Join Date: October 30, 2013
Project Contact: Giovanni G. Baez Flores, giovanni.baez@upr.edu or gbaez89@gmail.com
Telephone: (787) 412-3439
Project Description: Study of different types of signal noises in physical systems and other properties via the use of statistical methods.

indiana Indiana University ATLAS team

latech Louisiana Tech University ATLAS team

lbnl Lawrence Berkeley National Laboratory ATLAS team

fluidsim Project Name: Mesoscale modeling of fluids
Short Project Name: Fluidsim
Field of Science: Fluid mechanics
Field of Science (if Other): Biophysics
PI Name: Erkan Tuzel
PI Email: etuzel@wpi.edu
PI Organization: Worcester Polytechnic Institute
PI Department: Department of Physics
Join Date: Mar 9, 2016
Telephone Number: 508-831-5391
Project Description: In this project we study fluid/structure interactions using a novel particle-based fluid simulation technique.

ProtEvol Project Name: Epistasis in protein evolution
Short Project Name:ProtEvol
Field of Science: Evolutionary Biology
PI Name: Premal Shah
PI Email: shahpr@sas.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Biology
Join Date: Feb 23, 2015
Telephone Number: 8652355675
Project Description: How large a role does history play in evolution? Do later events depend critically on specific earlier events, or do all events occur more or less independently? If a change occurs early in evolution, does it become easier or harder to revert the change as time proceeds? We intend to explore these ideas in the context of protein evolution, by simulating sequence evolution under purifying selection and then systematically permuting the order of amino-acid substitutions.


louisville University of Louisville ATLAS team

mit Massachusetts Institute of Technology ATLAS team

msu Michigan State University ATLAS team

niu Northern Illinois University ATLAS team

nyu New York University ATLAS team

FFValidate Project Name: Protein Force Field Validation
Short Project Name: FFValidate
Field of Science: Physical Chemistry
PI Name: Vijay Pande
PI Email: pande@stanford.edu
PI Organization: Stanford University
PI Department: Department of Chemistry
Join Date: 25 June 2014
Project Contact: Lee-Ping Wang
Project Contact Email: leeping@stanford.edu
Telephone Number: +1.510-502-7032
Project Description: This project will involve running molecular dynamics simulations to validate new protein force fields. We will be comparing the results of the simulations to experimental protein crystal structures and nuclear magnetic resonance (NMR) measurements.

okstate Oklahoma State University ATLAS team

osu The Ohio State University ATLAS team

UserSchool2014 Project Name: OSG User School 2014
Short Project Name: UserSchool2014
Field of Science: Multidisciplinary
PI Name: Tim Cartwright
PI Email: cat@cs.wisc.edu
PI Organization: University of Wisconsin
PI Department: Computer Science
Join Date: June 2014
Project Description: OSG User School 2014 training project for OSG Connect

ou University of Oklahoma ATLAS team

pitt University of Pittsburgh ATLAS team

sc University of South Carolina ATLAS team

slac SLAC National Accelerator Laboratory ATLAS team

smu Southern Methodist University ATLAS team

NapusGenome Project Name: Genomic sequencing and transcriptome development for Brassica napus
Short Project Name: NapusGenome
Field of Science: Bioinformatics
PI Name: Joel Bader
PI Email: joel.bader@jhu.edu
PI Organization: Johns Hopkins University
PI Department: Department of Biomedical Engineering
Join Date: Oct 29, 2014
Project Contact: Yasir Suhail
Project Contact Email: yasir@jhu.edu
Telephone Number: (517)4023548
Project Description: We are assembling the genome of a number of plant lines, and conducting RNASeq studies for the development of a transcriptome and differential expression analysis.

stonybrook State University of New York at Stony Brook ATLAS team

psims Short Project Name: psims
Field of Science: Earth Sciences
PI Name: Joshua Elliott
PI Email: jelliott@ci.uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: Oct 21, 2014
Project Contact: Joshua Elliott
Project Contact Email: jelliott@ci.uchicago.edu
Telephone Number: 212-678-5630
Project Description: A framework for massively parallel climate impact simulations: the parallel System for Integrating Impact Models and Sectors (pSIMS). This framework comprises a) tools for ingesting and
converting large amounts of data to a versatile datatype based on a common geospatial grid; b) tools for translating this datatype into custom formats for site-based models; c) a scalable parallel framework for performing large ensemble simulations, using any one of a number of different impacts models, on clusters, supercomputers, distributed grids, or clouds; d) tools and data standards for reformatting outputs to common datatypes for analysis and visualization; and e) methodologies for aggregating these datatypes to arbitrary spatial scales such as administrative and environmental demarcations. By automating many time-consuming and error-prone aspects of large-scale climate impacts studies, pSIMS
accelerates computational research, encourages model intercomparison, and enhances reproducibility of
simulation results.

osg Projects defined within OSG will be found here.
OSGOpsTrain Project-Name = OSGOpsTrain
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = June 04, 2014
Sponsor =
OSG-Sponsor-Contact =

tufts Tufts University ATLAS team

RDCEP Project Name: Robust Decision Making on Climate and Energy Policy (RDCEP)
PI Name: Ian Foster, Lars Peter Hansen
PI Email: foster@mcs.anl.gov
Organization: University of Chicago
Department: Computation Institute
Join Date: Sept 23, 2013
Field of Science: Economics
Project Description: The Center for Robust Decision Making on Climate and Energy Policy conducts research in four main areas:

* Improving the fidelity of models used to forecast the impact of policies on future economic and climatic conditions. Many of the most decision-relevant aspects of climate and energy policy - for example, climate impacts and technological advances - are poorly or not at all represented in current policy analysis tools. The Center will build representations of the most important processes and increase model detail and resolution.
* Quantifying sensitivities and uncertainties in the parameters, processes, and impacts in models. RDCEP will develop methods to characterize the dependence of model output on input, parameter, and model uncertainty; incorporate these uncertainties in models; and study how to communicate probabilistic model output to decision makers.
* Identifying robust decisions in the face of uncertainty. The best policy is not necessarily that which produces the maximum return if all assumptions made are borne out, but the one that balances return and risk in the face of many uncertainties. The Center will develop models to identify robust strategies that perform well over a wide range of scenarios.
* Developing improved computational methods and numerical methods required to achieve these goals. New parallel stochastic dynamic programming, robust optimal control, and numerical optimization methods able to make full use of modern supercomputers will allow tools developed at the Center to incorporate sectoral and process detail and explore uncertainty, in ways not previously possible.

uchicago University of Chicago ATLAS team

uci University of California, Irvine ATLAS team

ucsc University of California, Santa Cruz ATLAS team

uiowa University of Iowa ATLAS team

megaprobe Project Name: Detection of differential expression in next generation sequencing data
Short Project Name: megaprobe
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Humberto Ortiz-Zuazaga
PI Email: humberto@hpcf.upr.edu
PI Organization: University of Puerto Rico
PI Department: Computer Science
Join Date: Oct 13, 2014
Project Contact: Humberto Ortiz-Zuazaga
Project Contact Email: humberto@hpcf.upr.edu
Telephone Number: 787-764-0000 x7430
Project Description: As next-generation sequencing continues to advance, it is outstripping Moore's Law, generating more data than can be analyzed with current techniques. We have developed discrete algorithms for detecting differential expression of genes in next-generation sequencing data. This project will explore how to run these algorithms on the OSG, including efficiently staging input files, running the algorithm on the grid, and collecting the results. We will apply the techniques to real and simulated expression data from Drosophila melanogaster.

CompNeuro Project Name: Computational Nueroscience
Short Project Name: CompNeuro
Field of Science: Neuroscience Science
PI Name: Po-He Tseng
PI Email: ptseng@neuro.duke.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: Oct 9, 2013
Project Contact Email: meierm@uchicago.edu
Telephone Number: 312-804-8245
Project Description: To give you a brief idea, I am trying to identify the information flow among several brain regions in rats in the neuronal level. The rats were actively doing a aperture discrimination task (whether a gate opened wide or narrow). I wish to find not only the static neuronal circuitry of the sensory input, but also the dynamics of the flow across time.


umass University of Massachusetts, Amherst ATLAS team

umich University of Michigan ATLAS team

ConnectTrain Project Name: Connect Training
Field of Science: Multidisciplinary
PI Name: Rob Gardner
PI Email: rwg@hep.uchicago.edu
Organization: University of Chicago
Department: CI
Join Date: August 20, 2013
Project Description: OSG Connect training activity.

unm University of New Mexico ATLAS team

Bioconductor Project Name: Bioconductor
Short Project Name: Bioconductor
Field of Science: Bioinformatics
PI Name: Martin Morgan
PI Email: martin.morgan@roswellpark.org
PI Organization: Roswell Park Cancer institute
PI Department: Biostatistics and Bioinformatics
Project Contact: Martin Morgan
Project Contact Email: martin.morgan@roswellpark.org
Telephone Number: 7168451300
Project Description: Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data.


USAtlas-TechSupport Project-Name = wg.USAtlas-TechSupport
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = March 06, 2016
Sponsor =
OSG-Sponsor-Contact =

uoregon University of Oregon ATLAS team

upenn University of Pennsylvania ATLAS team

uta University of Texas, Arlington ATLAS team

utdallas University of Texas, Dallas ATLAS team

utexas University of Texas, Austin ATLAS team

washington University of Washington ATLAS team

wisc University of Wisconsin-Madison ATLAS team

yale Yale University ATLAS team

B-Physics B Physics Working Group

Combined-Muon Combined Muon Working Group

DelhiWorkshop2015 Project-Name = DelhiWorkshop2015
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = March 05, 2015
Sponsor =
OSG-Sponsor-Contact =

ProtFolding Project Name: computational methods for protein folding
Short Project Name: protFolding
Field of Science: Bioinformatics
PI Name: Jinbo Xu
PI Email: jinbo.xu@gmail.com
PI Organization: TTIC
PI Department: computer science
Join Date: 6 June 2014
Project Contact: Feng Zhao
Project Contact Email: fengzhao21c@gmail.com
Telephone Number: 773-809-5158
Project Description: Study statistical machine learning and optimization algorithms for data-driven protein structure prediction, by learning sequence-structure relationship from existing protein sequence and structure data.

E-gamma E/gamma Working Group

Duke-QGP Project Name: Duke Quark-Gluon Plasma
Field of Science: Physics
PI Name: Steffen Bass
PI Email: steffen.bass@duke.edu
Organization: Duke University
Department: Physics
Join Date: August 28, 2013
Project Description: Event-by-event simulations of relativistic heavy-ion collisions. QGP characterization via model-to-data comparison.


cms

Anchor project for CMS Connect.

Exotics Exotics Working Group

Flavour-Tagging Flavour Tagging Working Group

Heavy-Ions Heavy Ions Working Group

GlassySystems Project Name: Studies of static and dynamic properties of glassy systems
Short Project Name: GlassySystems
Field of Science: Chemistry
PI Name: David Reichman
PI Email: drr2103@columbia.edu
Organization: Columbia University
Department: Chemistry
Join Date: Oct 25, 2013
Project Description: The dynamics and static properties of glassy systems can be studied in great detail by simple model systems, either those on a lattice or those consisting of mixtures of spherical particles. In order to do that, one can use any many techniques generally under the umbrella of Monte Carlo Sampling or Molecular Dynamics. In order to get detailed properties, is is often advantageous or necessary to run a large number of independent simulations, and to calculate properties averaged over these simulations. It may also be necessary to study these systems with a range of parameter values, e.g. temperature or system size. Hence, this problem lends itself well to high throughput computing, at least for cases where the individual simulations comprising a workflow are not too long.

SWC-OSG-IU15 Project-Name = SWC-OSG-IU15
Short Project-Name = SWC-OSG-IU15
Field-of-Science = Education
PI-Name = Robert Gardner
PI-Email = rwg@uchicago.edu
Join-Date = February 19, 2015
Project Description: Joint OSG and Software Carpentry Workshop at IUPUI, Indianapolis. March 3-6th 2015

Higgs Higgs Working Group

Inner-Tracking Inner Tracking Working Group

EvoProtDrug Project Name: Lattice Simulations of Protein Mutational Response to Folding and Binding Novel Drugs
Short Project Name: EvoProtDrug
Field of Science: Biophysics
Field of Science (if Other):
PI Name: Milo Lin
PI Email: milo.lin@utsouthwestern.edu
PI Organization: UT Southwestern
PI Department: Green Center for Systems Biology
Join Date: May 6, 2016
Project Contact: Jacob Quinn Shenker
Project Contact Email: jqshenker@g.harvard.edu
Project Description: Little is known about the evolutionary pathways enabling a protein to change its function to changing environmental needs, especially in regards to metabolism and toxicity. Evolution simulations that explicitly model the three-dimensional interaction of mutated proteins with their targets is a new approach that complements the ongoing explosion of directed evolution experiments. In this project, the evolutionary dynamics of a lattice representation of antibiotic resistance protein (beta lactamase) is studied by enhanced-sampling folding-binding simulations for an initial protein undergoing selection-dependent mutation to bind a new antibiotic. The goals of this work are to understand the fundamental physical bottlenecks and dynamical behavior of protein evolution. Important questions include the extent of dominant pathways (convergent evolution) and phase transitions in evolutionary rates (punctuated equilibrium). These principals and their structural underpinnings can also be used to inform rational design of antibiotics that exploit bottlenecks in pathogen mutational response.

Jet-EtMiss Jet/EtMiss Working Group

Monte-Carlo Monte Carlo Working Group

SUSY Supersymmetry Working Group

Standard-Model Standard Model Working Group

Tau Tau Working Group

Top Top Working Group

Errorstudy

Project Name: Effect of genotyping error on population structure inference
Short Project Name: Errorstudy
Field of Science: Evolutionary Biology
PI Name: Christopher Richards
PI Email: chris.richards@ars.usda.gov
PI Organization: USDA Agricultural Research Service
PI Department: National Center for Genetic Resources Preservation
Join Date: Nov 14, 2014
Project Contact: Patrick Reeves
Project Contact Email: pat.reeves@ars.usda.gov
Telephone Number: 9704953209
Project Description: Missing data and genotyping errors are common features of microsatellite data sets used to infer the genetic structure of natural populations. We used simulated data to quantify the effect of these data aberrations on the accuracy of population structure inference. Data sets were simulated under the coalescent and ranged from panmictic to highly subdivided with complex, randomly generated, population histories. Models describing the characteristic patterns of missing data and genotyping error in real microsatellite data sets were developed, and used to modify the simulated data sets. Performance of an ordination, a tree based, and a model based Bayesian method of population structure inference was evaluated before and after data set modifications. The ability to recover correct population clusters decreased as missing data increased. The rate of decrease was similar among analytical procedures, thus no single analytical approach was preferable when
faced with incomplete data. Researchers should expect to retrieve 3--4% fewer correct clusters for every 1% of a data matrix made up of missing data using these methods. For every 1% of a matrix that contained erroneous genotypes, approximately 1--2% fewer correct clusters were recovered using ordination and tree based methods. A Bayesian procedure that minimizes the deviation from Hardy Weinberg equilibrium in order to assign individuals to clusters performed better as genotyping error increased. We attribute this surprising result to the inbreeding like nature of microsatellite genotyping error, and recommend the use of related analytical methods that explicitly account for inbreeding, as a means to mitigate the effect of genotyping error.

RDCEP Project Name: Robust Decision Making on Climate and Energy Policy (RDCEP)
PI Name: Ian Foster, Lars Peter Hansen
PI Email: foster@mcs.anl.gov
Organization: University of Chicago
Department: Computation Institute
Join Date: 10 November 2014
Field of Science: Economics
Sponsor: OSG Connect
OSG Contact: David Champion
Project Contact:
Telephone:

The Center for Robust Decision Making on Climate and Energy Policy conducts research in four main areas:

* Improving the fidelity of models used to forecast the impact of policies on future economic and climatic conditions. Many of the most decision-relevant aspects of climate and energy policy - for example, climate impacts and technological advances - are poorly or not at all represented in current policy analysis tools. The Center will build representations of the most important processes and increase model detail and resolution.
* Quantifying sensitivities and uncertainties in the parameters, processes, and impacts in models. RDCEP will develop methods to characterize the dependence of model output on input, parameter, and model uncertainty; incorporate these uncertainties in models; and study how to communicate probabilistic model output to decision makers.
* Identifying robust decisions in the face of uncertainty. The best policy is not necessarily that which produces the maximum return if all assumptions made are borne out, but the one that balances return and risk in the face of many uncertainties. The Center will develop models to identify robust strategies that perform well over a wide range of scenarios.
* Developing improved computational methods and numerical methods required to achieve these goals. New parallel stochastic dynamic programming, robust optimal control, and numerical optimization methods able to make full use of modern supercomputers will allow tools developed at the Center to incorporate sectoral and process detail and explore uncertainty, in ways not previously possible.



EHEC

Project Name: Enteric pathogen genome plasticity
Short Project Name: EHEC
Field of Science: Microbiology
PI Name: Chuck Kaspar
PI Email: cwkaspar@wisc.edu
PI Organization: University of Wisconsin-Madison
PI Department: Bacteriology
Join Date: Sept 23, 2015
Project Contact: Eliot Stanton
Project Contact Email: estanton@wisc.edu
Telephone Number: (608) 263-5651
Project Description: Our research is primarily focused on the transmission and evolution of two zoonotic pathogens, enterohemorrhagic Escherichia coli (EHEC) and Salmonella. These pathogens reside in the intestinal tracts of animal hosts where they encounter diverse microbial communities, fluctuating nutrient levels, and myriad host factors. Transmission between hosts requires these pathogens to survive varied environmental conditions. The general stress protection system (regulated by the alternative sigma factor) is known to play a central role in environmental persistence and transmission. Acid and desiccation tolerance are two transmission-associated phenotypes that are dependent upon sigmas--regulated genes. We are also investigating the role of prophage in fitness. EHEC harbor multiple lambda-like prophage and cryptic phage remnants in their genome that facilitate genomic rearrangements, gene duplications, and deletions by homologous recombination.

We are investigating how these phage-mediated genomic rearrangements influence the persistence of EHEC in its bovine host and the environment. The goals of our research are to use results from these fundamental studies in the development of strategies to reduce pathogen transmission.

duke The Duke University CI Connect campus grid operated by the Scalable Computing Support Center, https://wiki.duke.edu/display/SCSC/Home.

OIM campus grid detail: https://oim.grid.iu.edu/oim/campusgrid?id=15.

SciSim

Project Name: Scientific Simulation, Scientific Computation and Scientific Visualization at ARCC, UCF⋅
Short Project Name: SciSim⋅
Field of Science: Computer Science⋅
PI Name: Amit Goel⋅
PI Email: amit.goel@ucf.edu⋅
PI Organization: UCF⋅
PI Department: Advanced Research Computing Center, Institute for Simulation and Training⋅
Join Date:⋅Sept 24, 2015
Project Contact: Amit GoelProject Contact Email: amit.goel@ucf.edu
Telephone Number: 407 502 9242
Project Description: The aim of this project is to create examples, demos and training materials to get UCF Faculty and Researchers get started for using OSG for HTC applications in the field of Scientific Simulations, Computation and Visualizations. Primarily, we expect to use NAMD, VMD, Matlab and R application software.⋅

4fermion Project Name: Critical behavior at strong coupling
Short Project Name: duke-4fermion
Field of Science: High Energy Physics
PI Name: Shailesh Chandrasekharan
PI Email: sch@phy.duke.edu
PI Organization: Duke University
PI Department: Physics Department
Join Date: 13 Jan 2014
Sponsor: Duke Campus Grid
OSG Sponsor Contact: scsc@duke.edu
Project Contact: Venkitesh Ayyar
Project Contact Email: vpa@duke.edu
Telephone Number: 619-504-9892

We are performing a lattice field theory calculation of a 2 flavour fermion model with a four fermion interaction. We look for critical behaviour at strong coupling.

campus Project Name: duke-campus
Short Project Name: duke-campus
Field of Science: Multidisciplinary
PI Name: Tom Milledge
PI Email: tm103@duke.edu
PI Department: OIT
Telephone Number:
Project Description: Duke CI Connect training activity



AMFORA Project Name: AMFORA
Short Project Name: AMFORA
Field of Science: Computer Science
PI Name: Ian Foster
PI Email: foster@anl.gov
PI Organization: University of Chicago
PI Department: Department of Computer Science
Join Date: November 1, 2013
Project Contact: Zhao Zhang zhaozhang@uchicago.edu
Telephone Number: 773-320-1109

Project Description: Amfora is a POSIX-compatible parallel scripting framework that lets users run existing programs in parallel with data stored in RAM on distributed platforms: e.g. clouds, clusters, supercomputers.

snada

Project Name: social network analysis
Short Project Name: snada
Field of Science: Psychology
PI Name: Wei Wang
PI Email: wei.wang@ucf.edu
PI Organization: university of central florida
PI Department: Psychology
Join Date:
Project Contact: Wei Wang
Project Contact Email: wei.wang@ucf.edu
Telephone Number: 2178989218
Project Description: to simulate social networks to analyze statistical properties

hABCNWHI Project Name: hABCNWHI
Short Project Name: hABCNWHI
Field of Science: Evolutionary Biology
PI Name: Yvonne Chan
PI Email: yvonne.l.chan@gmail.com
PI Organization: Iolani School
PI Department: iDepartment
Join Date: Nov 27 2105
Project Contact: Yvonne Chan
Project Contact Email: ychan@iolani.org
Telephone Number: 8089432369
Project Description: Hierarchical Approximate Bayesian Computation to Detect Community Response to
Sea Level Change in the Hawaiian Archipelago. Methods that integrate population sampling from multiple taxa into a single analysis are a much needed addition to the comparative phylogeographic toolkit. Here we present a statistical framework for multi-species analysis based on hierarchical approximate Bayesian computation (hABC) for inferring community dynamics and concerted demographic response. Detecting community response to climate change is an important issue with regards to how species have and will react to past and future events. Furthermore, whether species responded individualistically or in concert is at the center of related questions about the abiotic and biotic determinants of community assembly. This method combines multi-taxon genetic datasets into a single analysis to determine the proportion of a contemporary community that historically expanded in a temporally clustered pulse as well as when the pulse occurred. We will apply this method to 59 species in the Hawaiian Archip ela!
go in order to examine community response of coral reef taxa to sea-level change in Hawaii. The method can accommodate dataset heterogeneity such as variability in effective population size, mutation rates, and sample sizes across species and utilizes borrowing strength from the simultaneous analysis of multiple species. This hABC framework used in a multi-taxa demographic context can increase our understanding of the impact of historical climate change by determining what proportion of the community responded in concert or independently, and can be used with a wide variety of comparative phylogeographic datasets as biota-wide DNA barcoding data sets accumulate.




ERVmodels Project Name: Computational models for endogenous retrovirus evolution
Short Project Name: ERVmodels
Field of Science: Evolutionary Biology
PI Name: Fabricia Nascimento
PI Email: fabricia.nascimento@zoo.ox.ac.uk
PI Organization: University of Oxford
PI Department: Department of Zoology
Join Date: Oct 06, 2015
Project Contact Email: fabricia.nascimento@zoo.ox.ac.uk
Telephone Number: +447956630547
Project Description: Endogenous retroviruses (ERVs) are viewed as ancient retroviral infections in vertebrate genomes and are commonly referred to as viral fossils, accounting for approximately 8% of the human genome. In order to increase our understanding of these viruses in host genomes, I am developing more complex models that describe the evolution of ERVs in host genomes. Specifically, I am interested in understanding evolutionary patterns of ERVs that have intact genes and are theoretically able to re-infect when
compared to those that lost this ability.



CMT Project Name: Theory in Strongly Correlated Systems
Short Project Name: CMT
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Harold U. Baranger
PI Email: baranger@phy.duke.edu
PI Department: Physics
Join Date: Aug 11, 2016
Project Contact: Leo Fang
Project Contact Email: leofang@phy.duke.edu
Telephone Number: 919-724-9745
Project Description: We are condensed-matter theorists at Duke. We study the onset of strong correlation in various setups, such as qubits coupled to a 1D waveguide and impurities immersed in an electromagnetic environment. With the aid of the OSG distributive environment, we are able to solve problems using a variety of numerical approaches, including but not limited to quantum Monte Carlo, quantum jumps, etc.

Clemson Project Name: Clemson
Short Project Name: Clemson
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Marcin Ziolkowski
PI Email: zziolko@clemson.edu
PI Organization: Clemson University
PI Department: Cyberinfrastructure Technology Integration
Join Date: March 11, 2016
Project Description: HTC training for the computational scientist at Clemson University

cgdna Project Name: Coarse-Grained DNA Simulation
Short Project Name: cgdna
Field of Science: Computational Condensed Matter Physics
PI Name: Juan J de Pablo
PI Email: depablo@uchicago.edu
PI Organization: University of Chicago
PI Department: Institute for Molecular Engineering
Join Date: April 08, 2015
Project Contact: Joshua Lequieu
Project Contact Email: lequieu@uchicago.edu
Telephone Number: 408 836 7018
Project Description: Molecular-level information of DNA at nanometer length scales is of fundamental interest to many aspects of nanotechnology and biology. Molecular models provide a powerful tool to interrogate these systems by providing detailed thermodynamic and kinetic information. Towards this end, this project involves developing highly-accurate coarse-grained models of DNA and using them to study complex nano-scale phenomena.

MiniWorkshopUC15 Project-Name = MiniWorkshopUC15
Short Project-Name = MiniWorkshopUC15
Field-of-Science = Education
PI-Name = Robert Gardner
PI-Email = rwg@uchicago.edu
Join-Date = Apr 7, 2015
Project Description: Open Science Grid Mini-Workshop at University of Chicago, April 9th, 2015

rwg Project-Name = rwg
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = October 06, 2015
Sponsor =
OSG-Sponsor-Contact =

TechEX15

Project-Name = TechEX15
Field-of-Science = Technology
PI-Name = Robert Gardner
PI-Email = rwg@uchicago.edu
Organization/University = University of Chicago
Department = Computation Institute
Join-Date = October 06, 2015
Sponsor = None
OSG-Sponsor-Contact = Bala Desinghu

AnimalSocialNetworks Project Name: Animal Social Networks
Short Project Name: AnimalSocialNetworks
Field of Science: Ecology
PI Name: Erol Akcay
PI Email: eakcay@sas.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Biology
Join Date: Nov 30th 2015
Project Contact: Amiyaal Ilany
Project Contact Email: amiyaal@sas.upenn.edu
Project Description: Modeling the formation and dynamics of animal social networks, and how these dynamics affect phenomena at the individual and population levels

PainDrugs Project Name: Drug Discovery for Pain Treatment
Short Project Name: PainDrugs
Field of Science: Structural Biology
Field of Science (if Other):
PI Name: Pei Tang
PI Email: ptang@pitt.edu
PI Organization: University of Pittsburgh
PI Department: Anesthesiology
Join Date: Apr 14, 2015
Project Contact: Marta Wells
Project Contact Email: mmw88@pitt.edu
Telephone Number: 412-648-9137
Project Description: Virtual screening for novel anesthetic compounds.

polyHERV Project Name: Fine-mapping of human endogenous retrovirus polymorphisms
Short Project Name: polyHERV
Field of Science: Bioinformatics
PI Name: Gkikas Magiorkinis
PI Email: gkikas.magiorkinis@zoo.ox.ac.uk
PI Organization: University of Oxford
PI Department: Department of Zoology
Join Date: Feb 1 2016
Project Contact: Cindy Santander
Project Contact Email: cindy.santander@stx.ox.ac.uk
Telephone Number: +441865 281223
Project Description: Fine-mapping of human endogenous retrovirus polymorphisms


SWITCHHawaii Project Name: SWITCH-Hawaii
Short Project Name: SWITCHHawaii
Field of Science: Multidisciplinary
PI Name: Matthias Fripp
PI Email: mfripp@hawaii.edu
PI Organization: University of Hawaii, Manoa
PI Department: Electrical Engineering
Join Date: Dec 01, 2015
Telephone Number: (808) 348-9586
Project Description: We are using the SWITCH power system planning model to design power systems for Hawaii that have minimal expected cost across a wide range of future fossil fuel prices.


TPOT Project Name: Tree-based Pipeline Optimization Tool
Short Project Name: TPOT
Field of Science: Computer Science
PI Name: Dr. Jason H. Moore
PI Email: jhmoore@upenn.edu
PI Organization: University of Pennsylvania
PI Department: Institute for Biomedical Informatics
Join Date: Jan 26, 2016
Project Contact: Dr. Randal S. Olson
Project Contact Email: olsonran@upenn.edu
Telephone Number: 407-529-7692
Project Description: TPOT is an open source Python tool that automatically creates and optimizes Machine Learning pipelines using genetic programming. GitHub repo: http://github.com/rhiever/tpot



LiuLab Project Name: Phylogenomics
Short Project Name: LiuLab
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Kevin Liu
PI Email: kjl@msu.edu
PI Organization: Michigan State University
PI Department: Computer Science and Engineering
Join Date: July 7, 2016
Project Contact: Kevin Liu
Project Contact Email: kjl@msu.edu
Telephone Number: 517-355-5240
Project Description: The project goal is to create new computational methodologies for large-scale phylogenomic analyses involving complex evolutionary histories.

NeurOscillation Project Name: Oscillations in neural activity
Short Project Name: NeurOscillation
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Bradley Voytek
PI Email: bvoytek@ucsd.edu
PI Organization: University of California, San Diego
PI Department: Cognitive Science
Join Date: July 28, 2016
Project Contact: Scott Cole
Project Contact Email: scott.cole0@gmail.com
Telephone Number: 858-534-0002
Project Description: Our lab studies the rhythms of the brain, recorded electrically as oscillations in voltage. These brain rhythms have been hypothesized to underlie functional communication between different brain regions, but the mechanism by which it does this is not clear. Additionally, it is not clear from a biophysical standpoint how these oscillations are generated. Our lab studies both noninvasive and clinical recordings from human subjects and patients in order to better understand these rhythms of the brain. For example, the project contact's personal research investigates the variations in the waveform shape of neural oscillations. Why are some oscillations nonsinusoidal (e.g. sawtooth), how does this impact neural communication, and how does this relate to high-level behaviors?



PreBioEvo

Project Name: Prebiotic Evolution
Short Project Name: PreBioEvo
Field of Science: Physics
Field of Science (if Other):
PI Name: Professor J. Woods Halley
PI Email: halle001@umn.edu
PI Organization: University of Minnesota
PI Department: Physics
Join Date:Feb 2, 2016
Project Contact: J. Woods Halley
Project Contact Email: halle001@umn.edu
Telephone Number: 612- 624-0395
Project Desctiption:
We use simulations of a Kauffman-like model for prebiotic evolution to find the probabilities of lifelike steady states and study their properties. This project is supported by a NASA grant.
References:
A. Wynveen, I. Fedorov, and J. W. Halley, Nonequilibrium steady states in a model for prebiotic evolution, Physical Review E 89 , 022725 (2014) (https://doi.org/10.1103/PhysRevE.89.022725)

B. F. Intoy, A. Wynveen, and J. W. Halley, Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution, Physical Review E 94 , 042424 (2016) (https://doi.org/10.1103/PhysRevE.94.042424)

seq2fun Project Name: Distributed bioinformatics for motif discovery and functional prediction
Short Project Name: seq2fun
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Peter Freddolino
PI Email: petefred@umich.edu
PI Organization: University of Michigan
PI Department: Biological Chemistry, Computational Medicine & Bioinformatics
Join Date: Feb 4, 2016
Telephone Number: 6094391811
Project Description: We combine innovative high-throughput experiments with data mining approaches to identify functional regulatory elements in biological sequence, building the foundation for further experiments to map complete regulatory networks.


TDAstats Project Name: TDAstats
Short Project Name: TDAstats
Field of Science: Topological Data Analysis
PI Name: David Meyer
PI Email: dmeyer@math.ucsd.edu
PI Department: Mathematics
Telephone number: 1-760-519-5604
Project Description: We are performing topological data analyses on various datasets

ASPU Project Name: Genetic Association Tests
Short Project Name: ASPU
Field of Science: Bioinformatics
PI Name: ilyoup kwak
PI Email: ikwak@umn.edu
PI Organization: University of Minnesota
PI Department: Division of Biostatistics
Join Date: May 01, 2015
Project Contact: ilyoup kwak
Project Contact Email: ikwak@umn.edu
Telephone Number: 7143372488
Project Description: I am interested in developing genetic association tests using GWAS data

KickstarterDataAnalysis Project Name: Kickstarter Data Analysis
Short Project Name: KickstarterDataAnalysis
Field of Science: Computer Science
PI Name: Feng Bill Shi
PI Email: bill10@uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: May 7, 2015
Project Contact Email: meierm@uchicago.edu
Telephone Number: 312-804-8245

cgl Project Name: Computational Genetics Laboratory
Short Project Name: cgl
Field of Science: Bioinformatics
Field of Science (if Other): Medicine
PI Name: Jason H. Moore
PI Email: jhmoore@upenn.edu
PI Organization: Institute for Biomedical Informatics
PI Department: Biostatistics and Epidemiology
Join Date: May 11, 2015
Project Contact: Peter Andrews
Project Contact Email: andrewsp@upenn.edu
Telephone Number: (215) 746-7022
Project Description: We use machine learning to look for complex epistatic interactions associated with disease risk. Website: http://www.epistasis.org

Phylogenomics Project Name: Tree Functional Phylogenomics
Short Project Name: Phylogenomics
Field of Science: Ecology
PI Name: Nathan G Swenson
PI Email: swenson@umd.edu
PI Organization: University of Maryland
PI Department: Department of Biology
Join Date: May 11, 2015
Project Contact: Nathan G Swenson
Project Contact Email: swenson@umd.edu
Telephone Number: 520-205-2101
Project Description: The project entails the sequencing and assembly of the transcriptomes of 100+ non-model tree species from the USA and China. This information is then used to infer a functional phylogenomic tree from which inferences regarding functional similarity and species co-existence and diversity are drawn.

Paniceae-trans Project Name: Paniceae Transcriptomes
Short Project Name: Paniceaetrans
Field of Science: Evolutionary Biology
PI Name: Jacob Washburn
PI Email: jdwr47@mail.missouri.edu
PI Organization: University of Missouri
PI Department: Biological Sciences
Join Date: Oct 16, 2015
Telephone Number: 435-813-2850
Project Description: Processing of Transcriptome data from many species across the grass tribe Paniceae

SDEalgorithms Project Name: Algorithms for Simulation and Inference of Stochastic Differential Equations
Short Project Name: SDEalgorithms
Field of Science: Mathematics
PI Name: Harish S. Bhat
PI Email: hbhat@ucmerced.edu
PI Organization: University of California, Merced
PI Department: Applied Mathematics
Join Date: May 12, 2015
Telephone: 209-617-5806
Project Description: The goal of the project is to develop fast, accurate algorithms for simulation and inference of stochastic differential equations (SDE). Many SDE models of interest in science feature drift and diffusion coefficients with superlinear growth, which causes convergence and stability problems for many time integrators. We seek improved methods that can overcome these problems, with a focus on correctly computing moments and densities of the solution.

CHomP Project Name: ComputationalHomologyandDynamics
Short Project Name:CHomP
Field of Science: Mathematics
PI Name: Konstantin Mischaikow
PI Email: mischaik@math.rutgers.edu
PI Organization: Rutgers, The State University of New Jersey
PI Department: Mathematics
Join Date: May 12, 2015
Project Contact: Shaun Harker
Project Contact Email: sharker81@gmail.com
Telephone Number: 732-357-6825
Project Description: Our group studies dynamical systems using methods from computational topology. A current focus is the study of gene regulatory networks via switching system models and the computation of Conley-Morse databases.

boolnet Project Name: Experimental Boolean networks at Duke
Short Project Name: dukeboolnet
Field of Science: Network Science
Field of Science (if Other):
PI Name: Daniel Gauthier
PI Email: gauthier@phy.duke.edu
PI Organization: Duke University
PI Department: Physics
Join Date: Feb 9, 2016
Sponsor:
OSG Sponsor Contact: Bala Desinghu
Project Contact: Nicholas Haynes
Project Contact Email: nicholas.haynes@duke.edu
Telephone Number: +1 414-573-5023
Project Description: Experimental Boolean networks built on FPGAs, with the purpose of studying the fundamental dynamical properties of complex networks and applications.


GenomicIntegration Project Name: Genomic Data Integration
Short Project Name: GenomicIntegration
Field of Science: Bioinformatics
PI Name: Casey Greene
PI Email: Casey.S.Greene@dartmouth.edu
PI Organization: Dartmouth College
PI Department: Genetics
Join Date: May 13, 2015
Project Contact: Casey Greene
Project Contact Email: Casey.S.Greene@dartmouth.edu
Telephone Number: 603-650-1219
Project Description: Integration of publicly available large-scale genomic data.

poromech Project Name: Poromechanical Model Calibration
Short Project Name: poromech
Field of Science: Earth Sciences
Field of Science (if Other): Environmental Engineering
PI Name: Stephen Moysey
PI Email: smoysey@clemson.edu
PI Organization: Clemson University
PI Department: Environmental Engineering and Earth Sciences
Join Date:
Project Contact: Alexander Hanna
Project Contact Email: achanna@g.clemson.edu
Telephone Number: 818 497 3922
Project Description: In order to reduce carbon dioxide emissions, experts have proposed requiring major carbon dioxide emitters to modify their infrastructure to collect carbon dioxide exhaust and compress it into a super-critical fluid for injection into a well-sealed geologic structure such as an exhausted oil or natural gas reservoir. We are therefore developing a tool to assess and monitor potential carbon capture and storage sites.

We use large-scale reservoir simulations to investigate the mechanical stresses that would effect a reservoir as it is injected with super-critical carbon dioxide. Since we will not know the precise geologic structure of a given field site, this requires us to run a very large number of computationally-intensive simulations (10$^4$-10$^7$) in order to adequately investigate every possible geologic structure. These simulations can then be compared to measurements from the surface and from wells drilled into the reservoir, allowing us to identify which proposed structures best explain the data. This will allow us to infer the structure and state of the subsurface.



SO10GU Project Name: Fermion Masses and Mixings in SO(10) GUT
Short Project Name: SO10GU
Field of Science: High Energy Physics
Field of Science (if Other):
PI Name: shaikh saad
PI Email: shaikh.saad@okstate.edu
PI Organization: oklahoma state university
PI Department: physics
Join Date: Mar 22, 2016
Telephone Number: 405-385-4074
Project Description: searching for different realistic SO(10) GUT models that are able to reproduce the experimentally observed fermion masses and mixings

RicePhenomics

Project Name: Rice Phenomics
Short Project Name: RicePhenomics
Field of Science: Biology
PI Name: Harkamal Walia
PI Email: hwalia2@unl.edu
PI Organization: University of Nebraska Lincoln
PI Department: Agronomy
Join Date: Apr 28, 2015
Project Contact Email: hwalia2@unl.edu
Telephone Number: 4024721162
Project Description: Analysis of salinity tolerance in rice.

SWC-Duke15 Project-Name = SWC-Duke15
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = October 22, 2015
Sponsor =
OSG-Sponsor-Contact =

UserSchool2016 Project Name: OSG User School 2016
Short Project Name: UserSchool2016
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Tim Cartwright
PI Email: Tim Cartwright
PI Organization: University of Wisconsin Madison
PI Department: Computer Science
Join Date: July19, 2016
Project Description: Training project for OSG User School 2016

GTConvertHTC Project Name: Georgia Tech HTC workloads conversion
Short Project Name: GTConvertHTC
Field of Science: Multidisciplinary
PI Name: Mehmet Belgin
PI Email: mehmet.belgin@oit.gatech.edu
PI Organization: Georgia Institute of Technology
PI Department: Advanced Research Computing / PACE
Join Date: July 19, 2016
Project Contact: Mehmet Belgin
Project Contact Email: mehmet.belgin@oit.gatech.edu
Telephone Number: 404) 385-0665
Project Description: To help GT researchers convert their existing projects into HTC workloads.


AfricanSchool Project Name: African School of Physics
Short Project Name: AfricanSchool
Field of Science: Education
Field of Science (if Other):
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: UITS
Telephone Number: 3172745260
Project Description: A project for teaching the grid computing component of the African School of Physics.

QGIS Project Name: QGIS Solar Radiation
Short Project Name: QGIS
Field of Science: Geographic Information Science
Field of Science (if Other):
PI Name: Patricia Carbajales-Dale
PI Email: pcarbaj@clemson.edu
PI Organization: Clemson University
PI Department: Clemson Center for Geospatial Technologies
Join Date: Aug 3, 2016
Project Contact: Palak Matta
Project Contact Email: pmatta@clemson.edu
Telephone Number: 8646501993
Project Description: This project is created to explore QGIS and analyze solar suitability in South Carolina.

EvolSims Project Name:evolutionarysimulations
Short Project Name:EvolSims
Field of Science: Evolutionary Biology
PI Name: Oana Carja
PI Email: ocarja@sas.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Biology
Join Date: Jun 26, 2015
Telephone Number:6502406554
Project Description:Evolutionary simulation tracking gene frequencies under a variety of environmental conditions.



BioGraph Project Name: BiologicalGraphConstruction
Short Project Name:BioGraph
Field of Science: Bioinformatics
PI Name: Alex Feltus
PI Email: ffeltus@clemson.edu
PI Organization: Clemson University
PI Department: Genetics & Biochemistry
Join Date: July 06, 2015
Project Contact: Alex Feltus
Project Contact Email: ffeltus@clemson.edu
Telephone Number: 864-656-3231
Project Description: We are constructing gene interaction graphs at high scale.




z2dqmc Project Name: Confinement transition of Z2 gauge field coupled to fermions
Short Project Name: z2dqmc
Field of Science: Computational Condensed Matter Physics
PI Name: Snir Gazit
PI Email: snirgaz@berkeley.edu
PI Organization: University of California Berkeley
PI Department: Physics
Join Date: Dec 15, 2015
Project Contact Email: snirgaz@berkeley.edu
Telephone Number: 5103029979
Project Description: We study Z2 lattice gauge theory coupled to fermonic matter fields. The problem can be studied using sign problem free quantum Monte Carlo allowing a numerically unbiased computation.



DataTrieste Project Name: DataTrieste
Short Project Name: DataTrieste
Field of Science: Education
Field of Science (if Other):
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: UITS
Telephone Number: 3172745260
Project Description: A project for teaching the grid computing component at Trieste, ITCP.

pipediffusion Project Name: diffusion along core of screw dislocation in Aluminum
Short Project Name: pipediffusion
Field of Science: Materials Science
PI Name: Siavash Soltanibajestani
PI Email: ssoltanibajestani@scu.edu
PI Organization: Santa Clara University
PI Department: Mechanical
Join Date: Nov 03, 2015
Project Contact: Panthea Sepehrband
Project Contact Email: psepehrband@scu.edu
Telephone Number: 3233129809
Project Description: A molecular dynamics study (LAMMPS) of diffusion along the core of a screw dislocation is to be studied.


MCP Project Name: Structureofachemoreceptor
Short Project Name:MCP
Field of Science: Structural Biology
PI Name: C. S. Raman
PI Email: ramancs@gmail.com
PI Organization: University of Maryland Baltimore
PI Department: Pharmaceutical Sciences
Join Date: July 16, 2015
Project Contact Email: ramancs@gmail.com
Telephone Number: 410-706-4635
Project Description: We wish to use the Condor grid for running the program ARCIMBOLDO, which is geared for finding HT molecular replacement solutions. Because we have a recalcitrant system in our hands, we really need this system to solve our problem.

CometCloud Project Name: CometCloud
Short Project Name: CometCloud
Field of Science: Computer Science
Field of Science (if Other):
PI Name: Javier Diaz-Montes
PI Email: javidiaz@rdi2.rutgers.edu
PI Organization: Rutgers, the State University of New Jersey
PI Department: Rutgers Discovery Informatics Institute
Join Date: Jun 13, 2016
Project Contact: Javier Diaz-Montes
Project Contact Email: javidiaz@rdi2.rutgers.edu
Telephone Number: 8484458562
Project Description: CometCloud is an autonomic framework designed to enable highly heterogeneous, dynamically federated computing and data platforms that can support end-to-end application workflows with diverse and dynamic changing requirements. In this project, we would like to integrate OSG resources as part of our CometCloud federation to allow our users and collaborators to transparently use OSG.

EIC
Project Name: Electron Ion Collider
Short Project Name: EIC
Field of Science: High Energy Physics
Field of Science (if Other):
PI Name: Tobias Toll
PI Email: ttoll@bnl.gov
PI Organization: Brookhaven National Laboratory
PI Department: Physics
Join Date: July 20, 2016
Project Description: Electron Ion Collider (EIC) at BNL: Modeling the performance and optimizing the design of the prospected future Electron Ion Collider (EIC) at BNL. https://wiki.bnl.gov/eic/index.php/Main_Page


POLARBEAR Project Name: POLARBEAR: Cosmic Microwave Background Polarization and Cosmology
Short Project Name: POLARBEAR
Field of Science: Other
Field of Science (if Other): Observational Cosmology
PI Name: Brian Keating
PI Email: bkeating@ucsd.edu
PI Organization: Center for Astrophysics and Space Sciences, University of California - San Diego
PI Department: Physics
Join Date: Apr 14, 2016
Project Contact: Laura Russell
Project Contact Email: l1russell@ucsd.edu
Telephone Number: 858-822-7572
Project Description: The evolution of the universe is based on the idea of gravitational instability, whereby initial tiny fluctuations in the density of the Universe grew under the influence of gravity to form the large-scale gravitational structures we see around us today. These structures bend the trajectories of Cosmic Microwave Background photons through gravitational lensing, distorting its primordial polarization and converting divergent polarization patterns (E-modes) into curled polarization patterns (B-Modes). Imaging the lensing-generated B-modes, the POLARBEAR telescope will be able to shed light on all the components of the Universe influencing structure formation, such as neutrino mass and dark energy.


microphases Project Name: Phase Diagram of Microphases Forming Model
Short Project Name: microphases
Field of Science: Computational Condensed Matter Physics
PI Name: Patrick Charbonneau
PI Email: Patrick.Charbonneau@duke.edu
PI Organization: Duke University
PI Department: Chemistry
Join Date: Nov 04, 2015
Project Contact: Yuan Zhuang
Project Contact Email: yz148@duke.edu
Telephone Number: 9198863776
Project Description: Periodic microphases universally emerge in systems for which short-range inter-particle attraction is frustrated by long-range repulsion. The morphological richness of these phases makes them desirable material targets, but our relatively coarse understanding of even simple models limits our grasp of their assembly. The OSG computing resources will enable us to explore more solutions of the equilibrium phase behavior of a family of similar microscopic microphase formers through specialized Monte Carlo simulations.


colorado Project Name: cms-org-colorado
Description: CMS Connect project for University of Colorado
Organization: University of Colorado Boulder
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Douglas Johnson
Email: drjohn@pizero.colorado.edu
Field Of Science: High Energy Physics

fiu Project Name: cms-org-fiu
Description: CMS Connect at Florida International University
Organization: Florida International University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Pete Markowitz
Email: markowit@fiu.edu
Field Of Science: High Energy Physics

ksu Project Name: cms-org-ksu
Description: CMS Connect at Kansas State University
Organization: Kansas State University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Yurii Maravin
Email: maravin@phys.ksu.edu
Field Of Science: High Energy Physics

ohiostate Project Name: cms-org-ohiostate
Description: CMS connect at Ohio State University
Organization: Ohio State University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Stan Durkin
Field Of Science: High Energy Physics

rochester Project Name: cms-org-rochester
Description: CMS Connect at University of Rochester
Organization: University of Rochester
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Regina Demina
Email: regina@pas.rochester.edu
Field Of Science: High Energy Physics

freesurfer Project Name: freesurfer
Short Project Name:freesurfer
Field of Science: Neuro Science
PI Name:Donald Krieger
PI Email:kriegerd@upmc.edu
PI Organization: University of Pittsburgh
PI Department: Neurological Surgery
Join Date: Nov 06, 2015
Project Contact Email: sthapa@ci.uchicago.edu
Project Description: Brain image analysis with free surfer software

buffalo Project Name: cms-org-buffalo
Description: CMS Connect at State University of New York at Buffalo
Organization: SUNY Buffalo
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Avto Kharchilava
Email: avto@buffalo.edu
Field Of Science: High Energy Physics

ku Project Name: cms-org-ku
Description: CMS Connect at The University of Kansas
Organization: The University of Kansas
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Alice Bean
Email: abean@ku.edu
Field Of Science: High Energy Physics

neu Project Name: cms-org-neu
Description: CMS Connect at Northeastern University
Organization: Northeastern University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Emanuela Barbaris
Email: E.Barberis@neu.edu
Field Of Science: High Energy Physics

purdue Project Name: cms-org-purdue
Description: CMS Connect at Purdue University
Organization: Purdue University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Norbert Neumeister
Email: neumeist@purdue.edu
Field Of Science: High Energy Physics

UserSchool2015 Project Name: OSG User School 2015
Short Project Name: UserSchool2015
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Tim Cartwright
PI Email: Tim Cartwright
PI Organization: University of Wisconsin
PI Department: Computer Science
Join Date: June 2015
Project Description: OSG User School 2015 training project for OSG Connect

caltech Project Name: cms-org-caltech
Description: CMS Connect at Caltech
Organization: Caltech
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Harvey Newman
Email: newman@hep.caltech.edu
Field Of Science: High Energy Physics

nd

Project Name: cms-org-nd
Description: CMS Connect at Notre Dame
Organization: University of Notre Dame
Department: High Energy Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Kevin Lannon
Email: klannon@nd.edu
Field Of Science: High Energy Physics

oclab Project Name: OConnorlabproject
Short Project Name: oclab
Field of Science: Immunology
PI Name: Dave OConnor
PI Email: dhoconno@wisc.edu
PI Organization: UW-Madison
PI Department: Pathology and Lab Medicine
Join Date: Jul 30, 2015
Project Description: Immunology project in OConnor Lab


NSNM Project Name: Noise sensitive neuronal model
Short Project Name: NSNM
Field of Science: Neuroscience
Field of Science (if Other): Physics
PI Name: Vadim Apalkov
PI Email: vapalkov@gsu.edu
PI Organization: Georgia State University
PI Department: Department of Physics and Astronomy
Join Date: Jan 04, 2016
Project Contact: Suranga Edirisinghe
Project Contact Email: nerangedi@gmail.com
Telephone Number: 4044134441
Project Description: This model uses Matla parallel programming to predict noise sensitive neuronal model.


baylor Project Name: cms-org-baylor
Description: CMS Connect at Baylor University
Organization: Baylor University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Kenichi Hatakeyama
Email: Kenichi_Hatakeyama@baylor.edu
Field Of Science: High Energy Physics

brown Project Name: cms-org-brown
Description: CMS Connect at Brown University
Organization: Brown University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Meenakshi Narain
Meenakshi Narain
Field Of Science: High Energy Physics

ProbTracx Project Name: DTI-based Probabilistic Tractography on Pediatric Epilepsy with Anxiety Disorders
Short Project Name: ProbTracx
Field of Science: Neuroscience
PI Name: Dr. Bruce P. Hermann
PI Email: hermann@neurology.wisc.edu
PI Organization: Dr. Bruce P. Hermann
PI Department: Department of Neurology
Join Date: Aug 03 2015
Project Contact: Camille Garcia-Ramos
Project Contact Email: garciaramos@wisc.edu
Telephone Number: 787-929-4535
Project Description: Graph theory analyses would be investigated on weighted undirected matrices based on the probability of white matter connectivity between 26 regions comprising both cortical and subcortical structures on children with epilepsy with and without anxiety disorders. This project aims at investigating if there are fundamental differences in structural connectivity in children with idiopathic epilepsy with and without anxiety comorbidity. The neuropsychological implications of potential differences between groups would also be investigated.


bu Project Name: cms-org-bu
Description: CMS Connect at Boston University
Organization: Boston University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Jim Rohlf
Email: rohlf@bu.edu
Field Of Science: High Energy Physics

fit Project Name: cms-org-fit
Description: CMS Connect at Florida Institute of Technology
Organization: Florida Institute of Technology
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Marc Baarmand
Email: baarmand@fit.edu
Field Of Science: High Energy Physics

fnal Project Name: cms-org-fnal
Description: CMS Connect group for FNAL
Organization: Fermi National Accelerator Laboratory
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Lothar Bauerdick
Email: bauerdick@fnal.gov
Field Of Science: High Energy Physics

jhu Project Name: cms-org-jhu
Description: CMS Connect at Johns Hopkins University
Organization: Johns Hopkins University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Morris Swartz
Email: morris@jhu.edu
Field Of Science: High Energy Physics

rice Project Name: cms-org-rice
Description: CMS Connect at Rice University
Organization: Rice University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Jay Roberts
Email: roberts@physics.rice.edu
Field Of Science: High Energy Physics

llnl Project Name: cms-org-llnl
Description: CMS Connect at Lawrence Livermore National Laboratory
Organization: Lawrence Livermore National Laboratory
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Doug Wright
Email: wright20@llnl.gov
Field Of Science: High Energy Physics

numfpi Project Name: Monte Carlo Volume Renderer for Multiple Scattering
Short Project Name: numfpi
Field of Science: Computer Science
PI Name: Jerry Tessendorf
PI Email: jtessen@clemson.edu
PI Organization: Clemson University
PI Department: School of Computing
Join Date: Aug 03, 2015
Project Contact: Paul Kilgo
Project Contact Email: pkilgo@clemson.edu
Telephone Number: 2058269359
Project Description: We are developing a implementation of a Monte Carlo volume rendering method. The primary purpose is to impro
ve the calculation of multiple scattering physics, with possible applications in computer graphics, nuclear physics, and remote s
ensing. The project involves the numerical calculation of a Feynman path integral, which is what most of the computation is devot
ed to, and the primary need for high throughput computing methods.



rockefeller Project Name: cms-org-rockefeller
Description: CMS Connect at Rockefeller University
Organization: Rockefeller University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Dino Goulianos
Email: Konstantin.Goulianos@rockefeller.edu
Field Of Science: High Energy Physics

Perchlorate Project-Name = Perchlorate
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = April 12, 2016
Sponsor =
OSG-Sponsor-Contact =

DemandSC Project Name: Demand Estimation with Inertia and Aggregate Data
Short Project Name:DemandSC
Field of Science: Economics
PI Name: Fernando Luco and Guillermo Marshall
PI Email: fluco@tamu.edu, gmarshll@illinois.edu
PI Organization:Texas A&M University, University of Illinois at Urbana-Champaign
Join Date: Aug 03, 2015
Telephone Number: 9798624414
Project Description: We estimate switching costs with aggregate data in the context of price wars and collusion to study how mergers and changes to market structure affect welfare under the different competitive scenarios


BGAGenomics Project Name: BGA Genomics
Short Project Name:BGAGenomics
Field of Science: Bioinformatics
PI Name: Sucheta Tripathy
PI Email: tsucheta@gmail.com
PI Organization: Indian Institute of Chemical Biology
PI Department: Structural Biology and Bioinformatics division
Join Date: August 2015
Telephone Number: 91-9830999740
Project Description: This is a cyanobacteria genomics program


cmu Project Name: cms-org-cmu
Description: CMS Connect at Carnegie-Mellon University
Organization: Carnegie-Mellon University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Manfred Paulini
Email: paulini@cmu.edu
Field Of Science: High Energy Physics

EvolvingAI Project Name: Evolving Artificial Intelligence
Short Project Name: EvolvingAI
Field of Science: Computer Science
PI Name: Jeff Clune
PI Email: jeffclune@uwyo.edu
PI Organization: University of Wyoming
PI Department: Computer Science
Join Date: Aug 11, 2015
Project Contact: Joost Huizinga
Project Contact Email: jhuizing@uwyo.edu
Telephone Number: 3074601368
Project Description: Modern day software and robotics are notorious for lacking robustness and adaptability, often breaking down when encountering unexpected situations. Natural animals, on the other hand, are well known for their robustness and their ability to adapt to new environments. The Evolving Artificial Intelligence project aims to study how the robustness and adaptability of natural animals evolved, both to learn more about natural evolution, and to increase the robustness and adaptability of modern software and robotics systems.

fsu Project Name: cms-org-fsu
Description: CMS Connect at Florida State University
Organization: Florida State University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Todd Adams
Email: tadams@hep.fsu.edu
Field Of Science: High Energy Physics

mit Project Name: cms-org-mit
Description: CMS Connect at Massachusetts Institute of Technology
Organization: Massachusetts Institute of Technology
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Christoph Paus
Email: paus@mit.edu
Field Of Science: High Energy Physics

northwestern Project Name: cms-org-northwestern
Description: CMS Connect at Northwestern University
Organization: Northwestern University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Mayda Velasco
Email: mayda.velasco@cern.ch
Field Of Science: High Energy Physics

tamu Project Name: cms-org-tamu
Description: CMS Connect at Texas A&M University
Organization: Texas A&M University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Alexei Safonov
Email: safonov@physics.tamu.edu
Field Of Science: High Energy Physics

cornell Project Name: cms-org-cornell
Description: CMS Connect at Cornell University
Organization: Cornell University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Jim Alexander
Email: jima@lns.cornell.edu
Field Of Science: High Energy Physics

olemiss Project Name: cms-org-olemiss
Description: CMS Connect at University of Mississipi
Organization: University of Mississipi
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Lucien Cremaldi
Email: cremaldi@phy.olemiss.edu
Field Of Science: High Energy Physics

AmorphousOrder Project Name: Studies of growing amorphous order in glassy systems
Short Project Name: AmorphousOrder
Field of Science: Physics
PI Name: Patrick Charbonneau
PI Email: patrick.charbonneau@duke.edu
PI Organization: Duke University
PI Department: Department of Chemistry
Join Date:Jan 11 2015
Project Contact: Sho Yaida
Project Contact Email: sho.yaida@duke.edu
Project Description: Glass-forming liquids exhibit dramatical slowdown upon cooling, which may be controlled by the growing amorphous order that emerges due to the rarefaction of metastable states in the rugged free-energy landscape. The amorphous order is well captured by point-to-set correlations, and their measurements are indispensable in testing ideas surrounding this new order parameter. To attain good statistics on point-to-set observables, however, requires a huge number of independent simulations. Exploration of many parameter ranges -- such as temperature or confinement parameters -- further increases the need for parallel computing. The high throughout computing thus provides an ideal tool for investigating the notion of the growing amorphous order in glassy systems.

fairfield Project Name: cms-org-fairfield
Description: CMS Connect at Fairfield
Organization: Fairfield
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Dave Winn
Email: winn@mail.fairfield.edu
Field Of Science: High Energy Physics

princeton Project Name: cms-org-princeton
Description: CMS Connect at Princeton University
Organization: Princeton University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Dan Marlow
Email: marlow@princeton.edu
Field Of Science: High Energy Physics

purduecal Project Name: cms-org-purduecal
Description: CMS Connect at Purdue University Calumet
Organization: Purdue University Calumet
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Neeti Parashar
Email: neeti@fnal.gov
Field Of Science: High Energy Physics

rutgers Project Name: cms-org-rutgers
Description: CMS Connect at Rutgers University
Organization: Rutgers University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Amit Lath
Email: lath@physics.rutgers.edu
Field Of Science High Energy Physics

ttu Project Name: cms-org-ttu
Description: CMS Connect at Texas Tech University
Organization: Texas Tech University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Nural Akchurin
Email: nural.akchurin@ttu.edu
Field Of Science: High Energy Physics

ucr Project Name: cms-org-ucr
Description: CMS Connect at University of California, Riverside
Organization: UCR
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Gail Hanson
Email: gail.hanson@ucr.edu
Field Of Science: High Energy Physics

ucsd Project Name: cms-org-ucsd
Description: CMS Connect group for UCSD
Organization: University of California, San Diego
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Frank Wuerthwein
Email: fkw@ucsd.edu
Field Of Science: High Energy Physics

umd Project Name: cms-org-umd
Description: CMS Connect at University of Maryland
Organization: University of Maryland
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Andris Skuja
Email: skuja@umdhep.umd.edu
Field Of Science: High Energy Physics

utk Project Name: cms-org-utk
Description: CMS Connect at University of Tennessee
Organization: University of Tennessee
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Stefan Spanier
Email: spanier@slac.stanford.edu
Field Of Science: High Energy Physics

virginia Project Name: cms-org-virginia
Description: CMS Connect at University of Virginia
Organization: University of Virginia
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Brad Cox
Email: cox@uvahep.phys.virginia.edu
Field Of Science: High Energy Physics

PTMC Project Name: Monte Carlo simulation of proton therapy
Short Project Name: PTMC
Field of Science: Medical Physics
PI Name: Derek Dolney
PI Email: Derek.Dolney@uphs.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Radiation Oncology
Join Date: Oct 21, 2014
Telephone Number: 267-907-3928
Project Description: We are applying Monte Carlo particle transport codes to proton therapy treatment planning with the goal of reducing the uncertainty in the proton beam range in patient.


ucsb Project Name: cms-org-ucsb
Description: CMS Connect at University of California, Santa Barbara
Organization: UCSB
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Joe Incandela
Email: incandel@hep.ucsb.edu
Field Of Science: High Energy Physics

uiowa Project Name: cms-org-uiowa
Description: CMS Connect at University of Iowa
Organization: University of Iowa
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Yasar Onel
Email: yasar-onel@uiowa.edu
Field Of Science: High Energy Physics

ua Project Name: cms-org-ua
Description: CMS Connect at University of Alabama
Organization: University of Alabama
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Conor Henderson
Email: conor.henderson@cern.ch
Field Of Science: High Energy Physics

ucdavis Project Name: cms-org-ucdavis
Description: CMS Connect at University of California, Davis
Organization: UC Davis
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: John Conway
Email: conway@physics.ucdavis.edu
Field Of Science: High Energy Physics

unl Project Name: cms-org-unl
Description: CMS Connect group for UNL
Organization: University of Nebraska-Lincoln
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Kenneth Bloom
Email: kenbloom@unl.edu
Field Of Science: High Energy Physics

wisc Project Name: cms-org-wisc
Description: CMS Connect at University of Wisconsin
Organization: University of Wisconsin
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Wesley Smith
Email: wsmith@hep.wisc.edu
Field Of Science: High Energy Physics

ucla Project Name: cms-org-ucla
Description: CMS Connect at Universify of California, Los Angeles
Organization: UCLA
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Jay Hauser
Email: hauser@physics.ucla.edu
Field Of Science: High Energy Physics

ufl Project Name: cms-org-ufl
Description: CMS Connect at University of Florida
Organization: University of Florida
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Gena Mitselmakher
Email: mitselmakher@phys.ufl.edu
Field Of Science: High Energy Physics

vanderbilt Project Name: cms-org-vanderbilt
Description: CMS Connect at Vanderbilt University
Organization: Vanderbilt University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Will Johns
Email: will.johns@vanderbilt.edu
Field Of Science High Energy Physics

REDTOP Project Name: SimulationsrelatedtotheREDTOPexperiment
Short Project Name: REDTOP
Field of Science: High Energy Physics
Field of Science (if Other):
PI Name: Corrado Gatto
PI Email: gatto@fnal.gov
PI Organization: Fermilab
PI Department: Particle Physics
Join Date: July 20, 2016
Project Contact: Corrado Gatto
Project Contact Email: gatto@fnal.gov
Telephone Number: 630-8405011
Project Description: High intensity frontier experiment searching for physics beyond the Standard Model


uic Project Name: cms-org-uic
Description: CMS Connect at University of Illinois at Chicago
Organization: University of Illinois at Chicago
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Nikos Varelas
Email: nikos@fnal.gov
Field Of Science:High Energy Physics

umn Project Name: cms-org-umn
Description: CMS Connect at University of Minnesota
Organization: University of Minnesota
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Roger Rusack
Email: rusack@mnhep.hep.umn.edu
Field Of Science: High Energy Physics

upr Project Name: cms-org-upr
Description: CMS Connect at University of Puerto Rico
Organization: University of Puerto Rico
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Hector Mendez
Email: hector.mendez4@upr.edu
Field Of Science: High Energy Physics

wayne Project Name: cms-org-wayne
Description: Wayne State University
Organization: Wayne State University
Department: Physics
Sponsor: Campus Grid CMS Connect
Principal Investigator: Paul Karchin
Paul Karchin
Field Of Science: High Energy Physics

GeoTunnel Project Name: Geo Tunnel Radiography
Short Project Name: GeoTunnel
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Elena Guardincerri
PI Email: elenaguardincerri@gmail.com
PI Organization: Las Alamos National Lab
PI Department: Physics
Join Date: June 16, 2016
Project Contact: Elena Guardincerri
Project Contact Email: elenaguardincerri@gmail.com
Telephone Number: 505-665-2113
Project Description: Analyzing muon data to obtain information about the objects they traversed.

peers Project Name:Peer effects qrLMM
Short Project Name:peers
Field of Science: Education
Field of Science (if Other):Socialogy
PI Name: Jessica Sidler Folsom
PI Email: jfolsom@fcrr.org
PI Organization: Florida State University
PI Department: Florida Center for Reading Research
Join Date: Sep 02, 2015
Telephone Number: 8506450343
Project Description: This is an analysis of statewide data for all students in grades K-2. The aim of the analysis is to examine the effects of peers' achievement and composition effects on individual student achievement. This analysis requires mixed-effect modeling and quantile regression. R, and qrLMM package, will be used for analysis, 19 instances of analysis (one for each quantile .05 to .95 in .05 increments) will be conducted for each grade (k, 1, and 2). Each data set is less than 1GB, but requires approximately 6gb to run.


FutureColliders Project Name: VeryHighEnergyColliderPhysicsStudiesbeyondtheLHCenergy
Short Project Name:FutureColliders
Field of Science: High Energy Physics
PI Name: Sergei Chekanov
PI Email: chekanov@anl.gov
PI Organization: ANL
PI Department: HEP
Join Date: Aug 27, 2015
Project Contact Email: chekanov@anl.gov
Telephone Number: +01-630-252 6541
Project Description: Studies of physics potential of future high-energy experiments
(VLHC, FCC) with performance significantly beyond the Large Hadron Collider. The project will focus on Monte Carlo simulations for future energy fronter at DOE


Phylo Project Name: Novel methods for phylogenomic studies
Short Project Name:Phylo
Field of Science: Bioinformatics
PI Name: Siavash Mirarab
PI Email: smirarab@ucsd.edu
PI Organization: UC San Diego
PI Department: Electrical and Computer Engineering
Join Date: Aug 28, 2015
Telephone Number: 512 698 2967
Project Description: In this project, we design, implement, and test new methods for phylogenomics analyses. The goal of phylogenomics, as used here, is to estimate a species tree from genomic data. The ultimate goal of this line of research is reconstructing the tree of life.


xenon1t

Project-Name = xenon1t
Field-of-Science = Astrophysics
PI-Name = Luca Grandi
PI-Email = lgrandi@uchicago.edu
Organization/University = University of Chicago
Department = Physics
Join-Date = September 02, 2015
Sponsor = Suchandra Thapa
OSG-Sponsor-Contact = sthapa@ci.uchicago.edu

NSLS2ID Project Name: NSLS2 Insertion Device Beamline Simulation
Short Project Name:NSLS2ID
Field of Science: Accelerator Physics
PI Name: Dean Andrew Hidas
PI Email: dhidas@bnl.gov
PI Organization: Brookhaven National Laboratory
PI Department: National Synchrotron Light Source II
Join Date: Sept 02, 2015
Telephone Number: 6313443568
Project Description: Using magnetic field measurements taken in the lab of undulators and wigglers we will compute the downstream photon spectrum and distributions for many configurations of many of the NSLS2 insertion devices, including wavefront propagation and beamline simulation where needed.


SourceCoding Project Name: Source Coding
Short Project Name: SourceCoding
Field of Science: Electronic Engineering
Field of Science (if Other):
PI Name: David Mitchell
PI Email: dgmm@nmsu.edu
PI Organization: New Mexico State University
PI Department: Electrical
Join Date: Nov 12, 2015
Project Contact Email: golmoham@nmsu.edu
Project Description: Lossy compression is one of the classic problems in communication systems. The goal is to compress a given digital sequence so that it can be reconstructed up to a specific distortion (Shannon bound).


TrappedOrbits Project Name: Trace Trapped Orbits in a Spiral Galaxy
Short Project Name: TrappedOrbits
Field of Science: Astrophysics
Field of Science (if Other):
PI Name: Kate Daniel
PI Email: kjdaniel@brynmawr.edu
PI Organization: Bryn Mawr College
PI Department: Physics
Join Date: Jun 20, 2016
Telephone Number: 4104583608
Project Description: Computing a bunch of orbits in a disk galaxy in the presence of a spiral arm. The aim is to identify trapped orbits and determine the physical parameters that determine the rate of scattering out of trapped orbits.


PRTH Project Name: Precision Robotic Treatment Head
Short Project Name: PRTH
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Endre Takacs
PI Email: etakacs@clemson.edu
PI Organization: Clemson University
PI Department: Astronomy and Physics
Join Date: Apr 28, 2016
Project Contact: Leon Zheng
Project Contact Email: leonzhengxr@clemson.edu
Telephone Number: 864-656-5304
Project Description: Modeling of Monte Carlo simulations (Geant4) in order to test many different parameters (collimator and shielding size, irradiation angles...) to define the best design for new medical nuclear treatment devices

ncidft Project Name: Non-covalent interactions in Density Functional Theory
Short Project Name:ncidft
Field of Science: Computational Chemistry
PI Name: Alberto Otero de la Roza
PI Email: alberto@fluor.quimica.uniovi.es
PI Organization: National Research Council of Canada
PI Department: National Institute for Nanotechnology
Join Date: Sept, 09, 2015
Project Description: Density-Functional Theory (DFT) is the most successful method for the computation of quantum mechanical properties in molecules and solids. The aim of our project is to advance the DFT field by extending and improving the existing methods for modeling non-covalent interactions. Computational tasks for this project include DFT calculations on small molecules as well as periodic solids, and the use of home-made programs that implement our methodologies.

CGS Project Name: grian growth simulation
Short Project Name: GGS
Field of Science: Materials Science
PI Name: Panthea Sepehrband
PI Email: psepehrband@scu.edu
PI Organization: Santa Clara Univeristy
PI Department: Mechanical Engineering
Join Date: Nov 18, 2015
Project Contact: Panthea Sepehrband
Project Contact Email: psepehrband@scu.edu
Telephone Number: 4088338665
Project Description: Simulation of grain growth using the LAMMPS package.

TextLab Project Name: Text Lab
Short Project Name:TextLab
Field of Science: Multidisciplinary
PI Name: James Evans
PI Email: eduede@uchicago.edu
PI Organization: University of Chicago
PI Department: Computation Institute
Join Date: Sept 14 2015
Project Contact: Eamon Kenneth Duede
Project Contact Email: eduede@uchicago.edu
Telephone Number:
Project Description: Data analytics on available text with python programs



VERITAS Project Name: VERITAS
Short Project Name: VERITAS
Field of Science: astroparticle physics
Field of Science (if Other): astroparticle physics
PI Name: Nepomuk Otte
PI Email: otte@gatech.edu
PI Organization: Georgia Institute of Technology
PI Department: School of Physics & Center for Relativistic Astrophysics
Join Date: Aug 22, 2016
Project Contact: Nepomuk Otte
Project Contact Email: otte@gatech.edu
Telephone Number: 404 385 2503
Project Description: VERITAS is an array of four imaging atmospheric Cherenkov telescopes to detect gamma-rays with energies above 100 GeV from astrophysical sources. This project produces Monte Carlo simulations of air showers and the detector response for VERITAS and other imaging Cherenkov telescope project


NGNDA

Project Name: Next-Generation Neuroscience Data Analysis

Short Project Name: NGNDA

Field of Science: Neuroscience

PI Name: Caterina Stamoulis 

PI Email: caterina.stamoulis@childrens.harvard.edu

PI Organization: Harvard Medical School

PI Department: Medicine

Project Contact Email: caterina.stamoulis@childrens.harvard.edu

Telephone Number: 857-218-4737

Project Description: The goal of this project is to develop and deploy a novel computational platform for massive parallel analysis of high-dimensional brain networks.

EDFCHT Project Name: Effective degree of freedom correction for hypothesis testing
Short Project Name: EDFCHT
Field of Science: Economics
Field of Science (if Other):
PI Name: Jianghao Chu
PI Email: jchu018@ucr.edu
PI Organization: UC Riverside
PI Department: Economics
Join Date: Aug 26, 2016
Project Contact Email: jianghao.chu@email.ucr.edu
Telephone Number: 9515258996
Project Description: The project looks into the use of heteroskedasticity consistent variance-covariance estimators for conducting hypothesis testing. It uses Monte Carlo and bootstrap techniques to find the distribution of t-statistics using heteroskedasticity consistent variance-covariance estimator under normality and nonnormality. Comparison between using different heteroskedasticity consistent estimators are included and possible corrections are proposed and will be examined.

SysBioEdu Project Name: Teaching Systems Biology Analytics
Short Project Name: SysBioEdu
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Stephen Ficklin
PI Email: stephen.ficklin@wsu.edu
PI Organization: Washington State University
PI Department: Horticulture
Join Date: Sept 1, 2016
Telephone Number: 509-335-4295
Project Description: A project for teaching analysis of large data sets for construction of models (i.e. graphs) of biological systems.


g4PSI Project Name: MUon Scattering Experiment Simulations
Short Project Name: g4PSI
Field of Science: Physics
PI Name: Wolfgang Lorenzon
PI Email: lorenzon@umich.edu
PI Organization: University of Michigan
PI Department: Department of Physics
Join Date: Sept 22, 2017
Project Contact Email: rgilman@physics.rutgers.edu
Project Description: MUSE is an experiment to measure the proton radius using muon and electron scattering. I work on simulations of the experiment using GEANT4, a particle physics simulation toolkit.
PBOSD Project Name: Natural hazard risk analysis and probability-based optimum structural design
Short Project Name: PBOSD
Field of Science: Engineering
Field of Science (if Other):
PI Name: Yong Li
PI Email: yongli.goodluck@gmail.com
PI Organization: UC San Diego
PI Department: Structural Engineering
Join Date: Sept 15, 2016
Project Contact: Yong Li
Project Contact Email: yongli@ucsd.edu
Telephone Number: 8583378476
Project Description: Probability-based structural design has now emerged as the most advanced methodology to design new and retrofit existing structures in the face of uncertainty. The
focus of our research lies at the intersection of the areas of structural engineering and risk engineering against natural hazards (e.g., earthquakes). A large number of computationally-demanding Finite Element simulation jobs need to
be run as part of our research using open source software (e.g., OpenSees, Dakota) and script languages (e.g., Matlab, Python). Thus, the used of high-throughput computing resources will be central for the success of our potentially
high-impact research on probability-based optimum structural design against natural hazards.

GRScorrelation Your Name: Daniel J. Katz
Your Email Address: daniel.katz@csun.edu
Project Name: Golay-Shapiro-Rudin Correlation
Short Project Name: GRScorrelation
Field of Science: Mathematics & Computer Science
Field of Science (if Other):
PI Name: Daniel J. Katz
PI Email: daniel.katz@csun.edu
PI Organization: California State University, Northridge
PI Department: Mathematics
Join Date: Sept 25, 2017
Telephone Number: 8186772712
Project Description: We calculate the autocorrelation merit factors for Golay-Shapiro-Rudin-like sequences and the crosscorrelation merit factors for pairs of such sequences. Each of the 2^n seed sequences of length n gives rise to an infinite family of sequences, and we have asymptotic formulas (see our preprint at arXiv: 1702.07697 [math.NT]) for the merit factors based on calculations involving only the seeds. The number of seeds grows exponentially, thus making this a project that is well-suited to distributed computing. We would like to extend Table 2 of our paper (minimum combined measure of autocorrelation and crosscorrelation, unconstrained search) to seeds of length 28. And we would like to extend Tables 1 and 3 of our paper (minimum autocorrelation and minimum combined measure among those sequences of minimum autocorrelation) to seeds of length 52, because we have a conjectue that something interesting may happen at length 52. We expect that the extension of T!
ables 1 and 3 will require about 130,000 runs, each of which would take about an hour each on a single thread of a typical workstation. And we expect that the extension of Table 2 will require about 45,000 runs taking about 45 minutes each in a similar situation.

a1synchrony Your Name: Takafumi Arakaki
Your Email Address: tarakaki@uoregon.edu
Project Name: A1 synchrony
Short Project Name: a1synchrony
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Yashar Ahmadian
PI Email: yashar@uoregon.edu
PI Organization: University of Oregon
PI Department: Institute of Neuroscience
Join Date: Sept 27, 2017
Telephone Number: (541) 346-7636
Project Description: We investigate how synchronous population activity arise in spiking dynamics of the sensory and other cortical areas. We especially focus on how primary auditory cortex modulate dynamical timescales during spontaneous bump dynamics in quiet wake condition and up and down states in anesthetized and sleep conditions.

idTrackerParallel Project Name: Parallel idTracker on OSG
Short Project Name: idTrackerParallel
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Andrew Ruether
PI Email: aruethe2@swarthmore.edu
PI Organization: Swarthmore College
PI Department: ITS
Join Date: Spet 22, 2016
Telephone Number: 610-328-8254
Project Description: Running the idTracker software (http://www.idtracker.es/) in parallel on OSG.

FRISpoilageProject Project Name: 16S rRNA Gene Sequencing (Mothur)- Metagenomics on Spoiled Vegetables
Short Project Name: FRISpoilageProject
Field of Science: Microbiology
Field of Science (if Other):
PI Name: Dr. Charles Kaspar
PI Email: cwkaspar@wisc.edu
PI Organization: University of Wisconsin Madison
PI Department: Bacteriology (Microbiology)
Join Date: Sept 19, 2016
Project Contact: Erin Baldwin
Project Contact Email: ebaldwin2@wisc.edu
Telephone Number: 414-852-1290
Project Description: We are using the Mothur pipeline to clean and analyze 16S rRNA gene sequences collected from sous vide vegetables that were held under refrigeration until the onset of spoilage. (Goal- To identify microorganisms responsible for spoilage in sous vide processed vegetables)

PSFmodeling Your Name: Alex Wei
Your Email Address: shouyi.wei@stonybrook.edu
Project Name: Point-spread-function modeling for VersaPET image reconstruction
Short Project Name: PSFmodeling
Field of Science: Medical Imaging
Field of Science (if Other):
PI Name: Paul Vaska
PI Email: paul.vaska@stonybrookmedicine.edu
PI Organization: Stony Brook University
PI Department: Biomedical Engineering
Join Date: Sept 25, 2017
Project Contact: Alex Wei
Project Contact Email: shouyi.wei@stonybrook.edu
Telephone Number: 3146064087
Project Description: We need to use Monte-Carlo simulation to obtain the point spread function (PSF) kernels to be incorporated into our image reconstruction algorithm for more accurate image reconstruction

MarLab Your Name: Samuel Zimmerman
Your Email Address: sezimmer@einstein.yu.edu
Project Name: MarLab
Short Project Name: MarLab
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Jessica Mar
PI Email: jessica.mar@einstein.yu.edu
PI Organization: Albert Einstein College of Medicine
PI Department: Systems and Computational Biology
Join Date: Sept 25, 2017
Telephone Number:
Project Description: Doing RNA-seq analysis to understand biomolecular systems.


EmpModNatGas Project Name: One-to-Many Matching with Complementary Preferences: An Empirical Study of Natural Gas Lease Quality and Market Power
Short Project Name:EmpModNatGas
Field of Science: Other
Field of Science (if Other): Economics
PI Name: Ashley Vissing
PI Email: abvissing@uchicago.edu
PI Organization: University of Chicago
PI Department: Economics (EPIC)
Join Date: Sept 27 2016
Project Contact: Ashley Vissing
Project Contact Email: abvissing@uchicago.edu
Telephone Number: 502.727.5191
Project Description: I study the privately negotiated outcomes of the natural gas leasing market for mineral rights using a one-to-many matching model that allows for the presence of complementary preferences among firms negotiating bundles of land leases.

MOLLER

Your Name: Wouter Deconinck
Your Email Address: wdconinc@jlab.org
Project Name: Jefferson Lab 12 GeV MOLLER Experiment
Short Project Name: MOLLER
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Wouter Deconinck
PI Email: wdconinc@jlab.org
PI Organization: William & Mary
PI Department: Physics
Join Date: Oct 9, 2017
Telephone Number: 7572213539
Project Description: The MOLLER experiment at Jefferson Lab is a Department of Energy supported project (currently past CD-0 status) that aims to determine the electroweak mixing angle to the highest precision at low energies through elastic electron-electron scattering.

SFCphases Project Name: Mobile-stationary interaction in supercritical fluid chromatography
Short Project Name: SFCphases
Field of Science: Physical Chemistry
Field of Science (if Other):
PI Name: Paul Siders
PI Email: psiders@d.umn.edu
PI Organization: University of Minnesota Duluth
PI Department: Chemistry and Biochemistry
Join Date: Oct 3, 2016
Telephone Number: 2187266138
Project Description: Molecular-scale interaction between mobile and stationary
phases as they relate to supercritical fluid chromatography
(SFC) is modeled with hybrid Monte Carlo methods. Carbon dioxide is the main component of the mobile phase in SFC, which typically operates above the critical point. Simulations use seven mole percent methanol in the mobile phase. The objective of the proposed work is understanding the interaction between mobile-phase molecules and the alkylsilane-coated silica stationary phase. The computational method is Monte Carlo simulation. Hybrid molecular dynamics moves explore conformations of eighteen-carbon alkylsilane chains bonded to silica substrate.

lftsim Project Name: Lattice Field Theory Simulations
Short Project Name: lftsim
Field of Science: High Energy Physics
Field of Science (if Other):
PI Name: Joel Giedt
PI Email: giedtj@rpi.edu
PI Organization: Rensselaer Polytechnic Institute
PI Department: Physics
Join Date: Oct 4, 2016
Telephone Number: 5182766455
Project Description: We are simulating quantum field theory and many particle systems using lattice field theory techniques. Although some of our work involves lattice QCD, much of it does not. It encompasses supersymmetric systems and phase transitions in nonrelativisting systems.

IVSelection Project Name: GMM Estimation with Instruments Selection
Short Project Name: IVSelection
Field of Science: Economics
PI Name: Hao Xu
PI Email: hxu004@ucr.edu
PI Organization: UC Riverside
PI Department: Economics
Join Date: Oct 6, 2016
Project Contact: Hao Xu
Project Contact Email: hxu004@ucr.edu
Telephone Number: (626)383-8822
Project Description: We could like to preform instruments selection in the IV model by Machine Learning technique, and estimated the structure parameters by GMM method.

GanForAuto

Your Name: Handi Yu
Your Email Address: hy126@duke.edu
Project Name: Test Case Generation For ADAS Validation Via Cycle GAN
Short Project Name: GanForAuto
Field of Science: Electronic Engineering
Field of Science (if Other):
PI Name: Xin
PI Email: xinli.ece@duke.edu
PI Organization: Duke Unversity
PI Department: ECE
Join Date: Oct 3, 2017
Project Contact: Handi Yu
Project Contact Email: hy126@duke.edu
Telephone Number: 9195190556
Project Description: Test Case Generation For ADAS Validation Via Cycle GAN
Today's automobile is equipped with a large amount of electronic circuits to achieve intelligent functions, such as collision avoidance, traffic sign detection, etc., for autonomous driving. To meet the safety standard, ensuring extremely small failure probability over all possible operation conditions is one of the critical tasks for an autonomous driving system. However, physically observing all these corner cases over a long time is almost impossible in practice. In this project, we use machine learning algorithms to efficiently generate corner cases that are not easy to observe.

SimPrily Your Name: Ariella Gladstein
Your Email Address: agladstein@email.arizona.edu
Project Name: SimPrily
Short Project Name: SimPrily
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Ariella Gladstein
PI Email: agladstein@email.arizona.edu
PI Organization: University of Arizona
PI Department: Ecology and Evolutionary Biology
Join Date: Oct 3, 2017
Project Contact: Ariella Gladstein
Project Contact Email: agladstein@email.arizona.edu
Telephone Number:
Project Description: This project is for anyone using SimPrily to perform demographic simulations.
cern Project Name: cms-org-cern
Short Project Name: cms-org-cern
Description: CMS Connect at CERN
Organization: CERN
Department: Physics
PI Name: Achille Petrilli
PI Email: Achille.Petrilli@cern.ch
PI Department: Physics
Join Date: Oct 11, 2016
Group Description: CERN group

MMHA Project Name: Macroeconomic Model with Heterogeneous Agents
Short Project Name: MMHA
Field of Science: Economics
Field of Science (if Other):
PI Name: Ikuo Takei
PI Email: ikuo.takei@gmail.com
PI Organization: University of Wisconsin-Madison
PI Department: Department of Economics
Join Date: Oct 7, 2016
Project Contact: Ikuo Takei
Project Contact Email: ikuo.takei@gmail.com
Telephone Number: 608-421-8532
Project Description: The project aim is to estimate structural parameters of dynamic heterogeneous agent model to investigate the optimal design of monetary and financial policies. In particular, we need to find numerical solutions for stochastic dynamic programming problems with many state variables.

extinction Your Name: Diana Rypkema
Your Email Address: d.c.rypkema@gmail.com
Project Name: The combined impacts of land use change and climate change population dynamics
Short Project Name: extinction
Field of Science: Ecology
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 6, 2017
Project Contact: Diana Rypkema
Project Contact Email: d.c.rypkema@gmail.com
Telephone Number: 4257504768
Project Description: Population dynamics simulations in R and Python will be used to understand how increasing environmental variability due to climate change and habitat degradation interact and affect a species' time to extinction.
all Project Name: South Pole Telescope for all subgroups
Project Short Name: all
Field of Science: Astrophysics
PI Name: John Carlstrom
PI Email: jc@kicp.uchicago.edu
Organization: University of Chicago
Department: Astrophysics
Join Date: Oct 24, 2016
Project Description: The South Pole Telescope (or SPT) is a new telescope deployed at the South Pole that is designed to study the Cosmic Microwave background. Constructed between November 2006 and February 2007, the SPT is the largest telescope ever deployed at the South Pole. This telescope provides astronomers a powerful new tool to explore dark energy, the mysterious phenomena that may be causing the universe to accelerate.



spt Projects defined within SPT will be found here.

StSNE Your Name: Yichen
Your Email Address: ycheng11@gsu.edu
Project Name: Supervised dimension reduction
Short Project Name: StSNE
Field of Science: Other
Field of Science (if Other): Statistics, machine learning
PI Name: Yichen
PI Email: ycheng11@gsu.edu
PI Organization: Georgia State University
PI Department: Institute for Insight
Join Date: Oct 4, 2017
Telephone Number:
Project Description: Find low dimensional representation of the high dimensional data
msrcs Your Name: Mark Messner
Your Email Address: messner@anl.gov
Project Name: Molten Salt Reactor Clad Search
Short Project Name: msrcs
Field of Science: Engineering
Field of Science (if Other):
PI Name: Mark Messner
PI Email: messner@anl.gov
PI Organization: Argonne National Laboratory
PI Department: Nuclear Engineering Division
Join Date: Oct 4, 2017
Project Contact: Mark Messner
Project Contact Email: messner@anl.gov
Telephone Number: +1-630-252-6510
Project Description: We are searching for combinations of compatible materials to clad molten salt nuclear reactor (MSR) components. Conventional nuclear reactors typically use uncladded stainless-steel components as the clad represents a difficult-to-model failure mode and the coolant chemistry is typically not too corrosive. However MSR coolant chemistries can be very corrosive, even to stainless steels or structural Ni alloys. Therefore, we're looking for inert materials to clad SS or Ni-alloy base metals that do not accumulate significant mechanical strain or creep-fatigue damage during service. We can do this by parametrically looking at a wide range of clad materials and running fairly simple simulations to determine if they will be mechanically compatible with the base material. However, the parameter space is very large, and so we need to run a lot of these small simulations to get some idea of what properties compatible clad materials should have.


molcryst Project Name: MolCryst
Short Project Name: molcryst
Field of Science: Chemistry
PI Name: Olexandr Isayev
PI Email: olexandr@olexandrisayev.com
PI Organization: University of North Carolina at Chapel Hill
PI Department: Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy
Join Date: Oct 26, 2016
Project Description: Quantum chemical and machine learning insights into supra-molecular organization of molecular crystals.

mortality Your Name: Sha Jiang
Your Email Address: jiangsha44@outlook.com
Project Name: Jiangsha's project about population research
Short Project Name: mortality
Field of Science: Biology
Field of Science (if Other):
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 9, 2017
Project Contact: Sha Jiang
Project Contact Email: jiangsha44@outlook.com
Telephone Number: 6503873404
Project Description: This project is about the mortality of developed countries in Human Fertility Database.
U5Mortality Your Name: Ivan Mejia
Your Email Address: imejia@stanford.edu
Project Name: Inequalities in U-5 Mortality
Short Project Name: U5Mortality
Field of Science: Statistics
Field of Science (if Other): Demography
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 9, 2017
Telephone Number: (650) 4975000
Project Description: Analyze U-5 mortality convergence and compression in developed and developing countries.
Analyze lifespan inequality in U-5 mortality and how it correlates with other sources of inequality across and within countries.
QuantEvol Your Name: Shripad Tuljapurkar
Your Email Address: tulja@stanford.edu
Project Name: Theoretical Evolution
Short Project Name: QuantEvol
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 11, 2017
Project Contact: Shripad Tuljapurkar
Project Contact Email: tulja@stanford.edu
Telephone Number: 6507244171
Project Description: Simulations of evolution of quantitative characters in finite populations
UADataAnalytics Project Name: UADataAnalytics
Short Project Name: UAAnalytics
Field of Science: Data Analytics
Field of Science (if Other):
PI Name: Nirav Merchant
PI Email: nirav@email.arizona.edu
PI Organization: University of Arizona
PI Department: Arizona Research Laboratories
Join Date: 22 Nov 2016
Project Contact: Susan Miller
Project Contact Email: sjmiller@email.arizona.edu
Telephone Number: 520-626-2597
Project Description: Enabling scalable data analytics for University of Arizona researchers


BRDMS Your Name: XUETONG ZHAI
Your Email Address: xuz19@pitt.edu
Project Name: Binning ROC data method simulation
Short Project Name: BRDMS
Field of Science: Medical Imaging
Field of Science (if Other):
PI Name: XUETONG ZHAI
PI Email: xuz19@pitt.edu
PI Organization: University of Pittsburgh
PI Department: Bioengineering
Join Date:Oct 10, 2017
Project Contact: XUETONG ZHAI
Project Contact Email: xuz19@pitt.edu
Telephone Number: 4129802840
Project Description: This project is about simulation validation of a continuous data binning algorithm.
nicesims Project Name: nicesims
Short Project Name: nicesims
Field of Science: Astrophysics
PI Name: Nathan Kaib
PI Email: nathanakaib@gmail.com
PI Organization: University of Oklahoma
PI Department: Physics and Astronomy
Join Date: Nov 23, 2016
Project Contact: Matthew Clement
Project Contact Email: mattclement88@gmail.com
Telephone Number: 9255185164
Project Description: The Nice Model, is an evolutionary model for the outer Solar System which has explained many puzzling observed qualities of the Solar System. As the newly formed planets cleared debris from the young Solar System, Saturn, Uranus, and Neptune tended to scatter objects inward, while Jupiter ejected these planetesimals out of the Solar System. To conserve angular momentum through this process, Jupiter slowly migrates inward while the other giant planets move outward. When Jupiter and Saturn cross a period of orbital resonance, the entire Solar System experiences a massive instability. We will run simulations to probe the affect of such an instability on an evolving system of inner planets.


PopDy

Your Name: Wenyun Zuo
Your Email Address: wyzuo@stanford.edu
Project Name: Population dynamics
Short Project Name: PopDy
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 9, 2017
Telephone Number: (650) 724-4171
Project Description: Population dynamics across all species including human being. The life history, energy consumption, mortality pattern, and evolution paths and directions.

KnowledgeLab
Evolsim Your Name: Shripad Tuljapurkar
Your Email Address: tulja@stanford.edu
Project Name: Theoretical Evolution
Short Project Name: Evolsim
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 11, 2017
Project Contact: Shripad Tuljapurkar
Project Contact Email: tulja@stanford.edu
Telephone Number: 6507244171
Project Description: Simulations of evolution of quantitative characters in finite populations
EFIWorkshop2017
glass Your Name: Joyjit Kundu
Your Email Address: joyjit.kundu@duke.edu
Project Name: Dynamical criticality of glassy systems
Short Project Name: glass
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Patrick Charbonneau
PI Email: patrick.charbonneau@duke.edu
PI Organization: Duke University
PI Department: Chemsitry
Join Date: Oct 13, 2017
Telephone Number: (919) 613-6261
Project Description: Glass problem is one of the outstanding unsolved problems in condensed matter physics. The exact solution of a model glass former in the limit of infinite spatial dimension exhibit a dynamical critical point. It is important to check the robustness of the resulting description under changing d for fundamental understanding. In this project we aim to take a closer look at this dynamical criticality as a function of spatial dimensions, using models of polydisperse hard sphere fluids. Computer simulation is an essential tool to pursue this study.
Evolsim Your Name: Shripad Tuljapurkar
Your Email Address: tulja@stanford.edu
Project Name: Theoretical Evolution
Short Project Name: Evolsim
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Shripad Tuljapurkar
PI Email: tulja@stanford.edu
PI Organization: Stanford University
PI Department: Biology
Join Date: Oct 11, 2017
Project Contact: Shripad Tuljapurkar
Project Contact Email: tulja@stanford.edu
Telephone Number: 6507244171
Project Description: Simulations of evolution of quantitative characters in finite populations
snasim Your Name: Wei Wang
Your Email Address: wei.wang@ucf.edu
Project Name: Social network contagion simulation
Short Project Name: snasim
Field of Science: Psychology
Field of Science (if Other):
PI Name: Wei Wang
PI Email: wei.wang@ucf.edu
PI Organization: University of Central Florida
PI Department: Psychology
Join Date: Oct 19, 2017
Telephone Number: 2178989218
Project Description: This is project is to run conditions to determine the social network factors (e.g., structure, size,density) that affect the statistical power for detecting the interaction term of contagion parameter.
bgswgs Project Name: Brainstem Glioma WGS
Short Project Name: bgswgs
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Hai Yan
PI Email: hai.yan@duke.edu
PI Department: Pathology
Join Date: Dec 14, 2016
Project Contact: Lee Chen
Project Contact Email: lee.chen@duke.edu
Telephone Number: 919-613-2332
Project Description: To study the genomic and genetic aspects of brainstem gliomas

BetaDecay Your Name: Leonardo Javier Rodriguez Gutierrez
Your Email Address: leordz96@hotmail.com
Project Name: Neutrinoless Double Beta Decay
Short Project Name: BetaDecay
Field of Science: High Energy Physics
Field of Science (if Other):
PI Name: Liang Yang
PI Email: liangyg@illinois.edu
PI Organization: University of Illinois at Urbana-Champaign
PI Department: Physics
Join Date: Oct 17, 2017
Telephone Number: 2172442792
Project Description: Neutrinoless Double Beta Decay
CombinedPS Project Name: Combined Predictive Simulation of Musculoskeletal Biomechanics and Exoskeletons
Short Project Name: CombinedPS
Field of Science: Other
Field of Science (if Other): Biomechatronics
PI Name: Ozkan Celik
PI Email: ocelik@mines.edu
PI Organization: Colorado School of Mines
PI Department: Mechanical Engineering
Join Date: Jan 4, 2016
Project Contact: Mohammdhossein Saadatzi
Project Contact Email: msaadatz@mymail.mines.edu
Project Description: Design and control of exoskeletons (and prostheses) thus far has been primarily carried out following heuristic methods and exhaustive experimental (design and test) procedures. This approach significantly slows down design iterations and increases project costs. A predictive simulation framework for combined human and device dynamics is a valuable tool that can significantly accelerate optimal device and controller design.

We are building predictive models of combined muscuoloskeletal and exoskeleton dynamics for walking, where design parameters for the exoskeleton (such as actuation torque profiles) and various objective functions (such as metabolic cost) can be optimized simultaneously.



UNH-IMD Project Name: Computational Design of Green Catalysts
Short Project Name: UNG-IMD
Field of Science: Chemistry
PI Name: Dequan Xiao
PI Email: dxiao@newhaven.edu
PI Organization: University of New Haven
PI Department: Chemistry
Project Contact Email: dxiao@newhaven.edu
Telephone Number: 203-479-4189
Project Description: We are interested in developing new quantum chemistry methods and chemical structure optimization algorithms to design green heterogeneous catalysts.

Groundhog Project Name: Investigating Human Memory Replay via Intracranial Recordings
Short Project Name: Groundhog
Field of Science: Neuroscience
PI Name: Eric Halgren
PI Email: ehalgren@ucsd.edu
PI Organization: School of Medicine, University of California, San Diego
PI Department: Radiology
Join Date: Jan 6, 2016
Project Contact: Xi Jiang
Project Contact Email: x4jiang@ucsd.edu
Telephone Number: 8458576020
Project Description: Define spatio-temporal High Gamma activity patterns in the human neocortex during waking, and compare them to the observed activity in preceding/subsequent sleeps to see whether specific waking patterns recur during sleep.


holosim Project Name: Simulation of genetics in 2d expanding populations
Short Project Name: holosim
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Allan Strand
PI Email: stranda@cofc.edu
PI Organization: College of Charleston
PI Department: Biology
Join Date: Jan 23, 2017
Telephone Number: 843-953-9189
Project Description: simulations of population genetics in 2d landscapes

AdHocComm Project Name: Policy Communication in Ad Hoc Teams
Short Project Name: AdHocComm
Field of Science: Computer Science
Field of Science (if Other):
PI Name: Trevor Santarra
PI Email: trevor.santarra@gmail.com
PI Organization: University of California, Santa Cruz
PI Department: Computer Science
Join Date: Jan 26, 2017
Project Contact Email:
Telephone Number: 19186300364
Project Description: We are evaluating heuristic approaches from active learning for communicating partial policy information in ad hoc teamwork scenarios.

Glaucoma Your Name: Navya Ramakrishnan
Your Email Address: nr24.ramk@gmail.com
Project Name: Early Detection of Eye Diseases by processing Images
Short Project Name: Glaucoma
Field of Science: General Science
PI Name: Jordan Mullins
PI Email: jordan.mullins@pisd.edu
PI Organization: Rice Middle School, Plano
Join Date: Oct 26, 2017
Project Contact: Navya Ramakrishnan
Project Contact Email: nr24.ramk@gmail.com
Telephone Number: 2149267751
Project Description: Early detection of Eye diseases by processing images
srccoding Project Name: Source Coding under Privacy Constraints
Short Project Name: srccoding
Field of Science: Electronic Engineering
Field of Science (if Other):
PI Name: Joerg Kliewer
PI Email: jkliewer@njit.edu
PI Organization: New Jersey Institute of Technology
PI Department: ECE
Join Date: Jan 30, 2017
Telephone Number: 575 405 9528
Project Description: Studying coding schemes for lossy source compression under privacy constraints

EpiBrain Your Name: Tiwalade Sobayo
Your Email Address: tsobayo@iit.edu
Project Name: Exploring the dynamics of the epileptic brain
Short Project Name: EpiBrain
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: David Mogul
PI Email: mogul@iit.edu
PI Organization: Illinois Institute of Technology
PI Department: Biomedical Engineering
Join Date: Oct 27, 2017
Project Contact: David Mogul
Project Contact Email: mogul@iit.edu
Telephone Number: 312-567-3873
Project Description: We are trying to better understand how networks evolve in the brain of animals and humans with epilepsy. We hope to leverage this information in the design of more effective electrical stimulation paradigms.

TCGAPartCorr Project Name: TCGA Partial Correlation Structures
Short Project Name: TCGAPartCorr
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Chad Shaw
PI Email: cashaw@bcm.edu
PI Organization: Baylor College of Medicine
PI Department: Molecular and Human Genetics
Join Date: Feb 14, 2017
Project Contact: Alexander Renwick
Project Contact Email: renwick@bcm.edu
Telephone Number: 713 798 7849
Project Description: This is a project to characterize partial correlation relationships within and between data types in the data available from The Cancer Genome Atlas (TCGA).


NCOppSchool Project Name: Effects of School Choice in the North Carolina Opportunity Scholarship
Short Project Name: NCOppSchool
Field of Science: Economics
PI Name: Michael Dinerstein
PI Email: mdinerstein@uchicago.edu
PI Organization: The University of Chicago
PI Department: Economics
Join Date: Feb 28, 2017
Project Contact: Ken Jung
Project Contact Email: jkjung@uchicago.edu
Telephone Number: 3367450714
Project Description: Studying the effects of the North Carolina Opportunity Scholarship using a discrete choice model. The estimation recovers utility parameters for school choice using school enrollments.

IngaCFMID Project Name: MS/MS In silico fragmentation
Short Project Name: IngaCFMID
Field of Science: Ecology
Field of Science (if Other):
PI Name: Thomas A. Kursar
PI Email: kursar@biology.utah.edu
PI Organization: University of Utah
PI Department: Biology
Join Date: Mar 1, 2017
Project Contact: Dale Forrister
Project Contact Email: dlforrister@gmail.com
Telephone Number:
Project Description: We study how interactions between plants and their insect herbivores lead to the evolution of plant defenses, including plant's chemical defenses. In order to identify some of the many unknown compounds we have isolated via LC-MS from the tropical tree genus Inga (Fabaceae), we use in silico fragmentation to predict the ms/ms spectra for a given chemical structure using Competitive Fragmentation Modeling for Metabolite Identification (CFM-ID) (http://cfmid.wishartlab.com). This allows us to match observed ms/ms spectra with a theoretical library of known and predicted chemical structures.

UNLbcrf

Project Name: UNL - Bioinformatics Core Research Facility
Short Project Name: UNLbcrf
Field of Science: Computational Biology, Bioinformatics, Proteomics
PI Name: Jean-Jack M. Riethoven
PI Email: jeanjack@unl.edu
PI Organization: Bioinformatics Core Research Facility
PI Department: Center for Biotechnology, University of Nebraska-Lincoln
Join Date: Mar 2, 2017
Telephone Number: 402-472-7949
Project Description: The Bioinformatics Core Research Facility at UNL runs several large scale compute projects a year. Our main compute is focused on sequence analysis, de-novo assembly and gene prediction/annotation, secondary structure prediction, peptide-protein docking, and phenotype image analysis. We tend to run projects that deal with species critical for agriculture, both crops and livestock, but also with human-virus or food-gut microbiome interactions.

Diffpred Your Name: Cesar F Caiafa
Your Email Address: ccaiafa@iu.edu
Project Name: Diffusion-predictor
Short Project Name: Diffpred
Field of Science: Neuroscience
Field of Science (if Other): Computer Science
PI Name: Franco Pestilli
PI Email: franpest@indiana.edu
PI Organization: Indiana University
PI Department: Psychological and Brain Sciences
Join Date: Nov 6, 2017
Project Contact: Cesar F Caiafa
Project Contact Email: ccaiafa@iu.edu
Telephone Number: 812 318 7659
Project Description: Modelling and simulation of diffusion magnetic resonance images (dMRI) using white matter tract mapping information

OTPCand0vbb

Your Name: Andrey Elagin
Your Email Address: elagin@hep.uchicago.edu
Project Name: Development of Optical Tracking Techniques Using Fast Timing
Short Project Name: OTPCand0vbb
Field of Science: Physics
Field of Science (if Other):
PI Name: Henry Frisch
PI Email: frisch@hep.uchicago.edu
PI Organization: University of Chicago
PI Department: Enrico Fermi Institute
Join Date: Nov 9, 2017
Project Contact: Andrey Elagin
Project Contact Email: elagin@hep.uchicago.edu
Telephone Number: 7737027480
Project Description: PSEC group at the University of Chicago is developing Large-Area Picosecond Photo-Detectors (LAPPDs). By reconstructing the arrival position and time of photons produced in water or liquid scintillator on highly segmented fast photo-detectors such as LAPPDs one can reconstruct tracks by using the 'drift time' of photons, much as one does
with electrons in a Time Projection Chamber. We are developing new event reconstruction techniques for large water and liquid scintillator detectors. For example see A. Elagin et al., "Separating Double-Beta Decay Events from Solar Neutrino Interactions in a Kiloton-Scale Liquid Scintillator Detector by Fast Timing", Nucl. Instr. Meth. Phys. Res. A849 (2017) 102.

Nipyperegtest Project Name: Nipype - Regression testing framework
Short Project Name: Nipyperegtest
Field of Science: Medical Imaging
Field of Science (if Other):
PI Name: Satrajit Ghosh
PI Email: satra@mit.edu
PI Organization: MIT
PI Department: McGovern Institute for Brain Research
Join Date: Mar 13, 2017
Telephone Number: 617-324-3544
Project Description: Regression testing of various brain imaging tools

ClusterJob Project Name: ClusterJob
Short Project Name: CJ
Field of Science: Mathematics & Computer Science
Field of Science (if Other):
PI Name: Hatef Monajemi
PI Email: monajemi@stanford.edu
PI Organization: Stanford University
PI Department: Statistics
Join Date: Mar 14, 2017
Telephone Number: 6509991512
Project Description: ClusterJob is a project for 'painless massive computational experiments'. Visit www.clusterjob.org

macsSwigmodels

Project Name: Demographic Inference with Approximate Bayesian Computation
Short Project Name: macsSwigmodels
Field of Science: Evolutionary Biology
PI Name: Ariella Gladstein
PI Email: agladstein@email.arizona.edu
PI Organization: University of Arizona
PI Department: Ecology and Evolutionary Biology
Join Date: Mar 14, 2017
Project Description: Every individual's genome carries within it the history of all the ancestors of that individual. Thus, by analyzing a small number of genomes, we can accurately infer the demographic history of entire human populations. This demographic history helps establish a baseline that is needed for research and discovery in medical genomics.
We are using a process to more accurately infer the demographic history of human populations by comparing genomic statistics from millions of genome simulations to real population genomic data. While other researchers have worked with this process using only a few individuals or a portion of a chromosome, we are pushing the limit of computing capabilities by simulating whole chromosomes of hundreds of individuals. Using the whole chromosome allows us to look at more recent demographic history, which is particularly helpful in finding genetic links to disease processes. After publication, we will make our pipeline available so other researchers can apply it to other populations.
This project pushes the frontier of genomic research in that it uses new methods, simulates a larger part of the genome, and is being applied to populations not yet thoroughly studied.

TRNG Project Name: Testing Random number Generators
Short Project Name: TRNG
Field of Science: Computer Science
PI Name: Asia Aljahdali
PI Email: aoa11c@my.fsu.edu
PI Organization: Florida State University
PI Department: Computer Science
Join Date: Mar 15, 2017
Project Contact: aoa11c@my.fsu.edu
Project Contact Email: aoa11c@my.fsu.edu
Telephone Number: 8504432191
Project Description: Testing Random number Generators via parallel Testu01 package.

Leaderbipartite Project Name: Decomposition of products of complete graphs
Short Project Name: Leaderbipartite
Field of Science: Mathematics
Field of Science (if Other):
PI Name: Jozsef Balogh
PI Email: jozsebal@gmail.com
PI Organization: University of Illinois at Urbana-Champaign
PI Department: Department of Mathematics
Join Date: Apr 4, 2017
Telephone Number: 2178987312
Project Description: Leader-Milicevic-Tan asked how many products of complete bipartite graphs are needed to decompose the edge set of K_3 x K_n. Doing this with 2*(n-1) is trivial, here we use simulated annealing to search for a better construction.

JediNetworks Project Name: Jedi Networks
Short Project Name: JediNetworks
Field of Science: Network Science
PI Name: Brad Voytek
PI Email: bvoytek@ucsd.edu
PI Organization: Cognitive Science
PI Department: Cognitive Science
Join Date: Apr 4, 2017
Project Contact: Erik Peterson
Project Contact Email: erik.exists@gmail.com
Project Description: Training recurrent neural nets on various tasks; discretizing the dynamics of the networks and observing changes in network stability, performance and topology.


MaizeAminoAcids Project Name: Maize Amino Acids
Short Project Name: MaizeAminoAcids
Field of Science: Evolutionary Biology
PI Name: Timothy M Beissinger
PI Email: beissingert@missouri.edu
PI Organization: University of Missouri and USDA-ARS
PI Department: Divison of Plant Sciences
Join Date: Mar 20, 2017
Project Description: The amino acid content in maize kernels is critically important for human and animal nutrition. However, the genetic basis underpinning amino acids is not fully understood. We are performing Genome Wide Association Studies and Genomic prediction in a panel of several thousand maize plants genotyped at tens of millions of loci to finely dissect amino acid traits in maize.

evolmarinva Project Name: Evolutionary Biology of Marine Invasions
Short Project Name: evolmarinva
Field of Science: Evolutionary Biology
PI Name: Erik Sotka
PI Email: eriksotka@gmail.com
PI Organization: College of Charleston
PI Department: Department of Biology
Join Date: Mon 20, 2017
Project Contact: Ben Flanagan
Project Contact Email: flanaganba@g.cofc.edu
Telephone Number: 8438174974
Project Description: Our group uses genomic tools to understand the evolutionary process of marine invasions.

selfassembly Project Name: Nanoscale Self-Assembly of Molecular Wires
Short Project Name: selfassembly
Field of Science: Chemistry
PI Name: Eddie Tysoe
PI Email: wtt@uwm.edu
PI Organization: University of Wisconsin Milwaukee
PI Department: Chemistry
Join Date: Mar 23, 2017
Project Contact: Dan Siercks
Project Contact Email: dsiercks@uwm.edu
Telephone Number: 4142071150
Project Description: The influence of directing agents in the self-assembly of molecular wires to produce two-dimensional electronic nanoarchitectures is studied here using a Monte Carlo approach to simulate the effect of arbitrarily locating nodal points on a surface, from which the growth of self-assembled molecular wires can be nucleated.

LGAMUT Your Name: Pratyaydipta Rudra
Your Email Address: pratyaydipta.rudra@ucdenver.edu
Project Name: Longitudinal GAMuT simulations
Short Project Name: LGAMUT
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Debashis Ghosh
PI Email: Debashis.ghosh@ucdenver.edu
PI Organization: University of Colorado Denver
PI Department: Biostatistics and Informatics
Join Date: Nov 13, 2017
Project Contact: Pratyaydipta Rudra
Project Contact Email: pratyaydipta.rudra@ucdenver.edu
Telephone Number: 9196994043
Project Description: Simulations for developing a kernel based statistical methodology.
TelescopeArray Your Name: Dmitri Ivanov
Your Email Address: dmiivanov@gmail.com
Project Name: Telescope Array Experiment
Short Project Name: TelescopeArray
Field of Science: Astro-particle Physics
Field of Science (if Other):
PI Name: Gordon Thomson
PI Email: thomson@physics.utah.edu
PI Organization: University of Utah
PI Department: Physics and Astronomy
Join Date: Nov 15, 2017
Project Contact: Frank Misak
Project Contact Email: misak@cosmic.utah.edu
Telephone Number: 8015816628
Project Description: Telescope Array (TA) is the largest cosmic ray detector in the Northern hemisphere, which is located in Millard county, Utah. TA studies cosmic ray energy spectrum, mass composition, and arrival directions in the energy range from 4 PeV to 100 EeV and above. The address of the projects' website is http://www.telescopearray.org.

WheatGenomics Project Name: Wheat Genomics
Short Project Name: WheatGenomics
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Ghana Challa
PI Email: ghana.challa@sdstate.edu
PI Organization: South Dakota State University
PI Department: Biology and Microbiology
Join Date: Apr 17, 2017
Project Description: Analysis of wheat genome and transcriptome datasets

MCSpinLiquid Project Name: Quantum Monte Carlo Simulation of Spin Liquids
Short Project Name: MCSpinLiquid
Field of Science: Physics
PI Name: John McGreevy
PI Email: mcgreevy@physics.ucsd.edu
PI Organization: UC San Diego
PI Department: Physics
Join Date: Apr 17, 2017
Project Contact: Tarun Grover
Project Contact Email: grover.tarun@gmail.com
Telephone Number: 858-822-6758
Project Description: Perform monte carlo simulation on spin liquid systems

sykclusters Project Name: SYK Clusters
Short Project Name: sykclusters
Field of Science: Computational Condensed Matter Physics
PI Name: John McGreevy
PI Email: mcgreevy@physics.ucsd.edu
PI Organization: University of California, San Diego
PI Department: Physics
Join Date: April 17, 2017
Project Contact: Daniel Ben-Zion
Project Contact Email: dbenzion@physics.ucsd.edu
Telephone Number: 310-237-2569
Project Description: DMRG simulation of many body fermion system

KORDrugdiscov Project Name: Identification of Highly Selective Kappa Opioid Receptor Ligands
Short Project Name: KORDrugdiscov
Field of Science: Biochemistry
PI Name: Brian Provencher
PI Email: provencherb@merrimack.edu
PI Organization: Centre College
PI Department: Chemistry
Join Date: Apr 18, 2017
Project Contact: David Toth
Project Contact Email: david.toth@centre.edu
Telephone Number: 859-238-5405
Project Description: It has been shown that deregulation of the Kappa Opioid Receptor (KOR) can contribute to drug abuse and other psychiatric disorders. Therefore, KOR agonists/antagonists have become a target for the development of pharmacotherapies for the treatment of addiction and other CNS disorders. Unfortunately, few chemical scaffolds have been shown to bind selectively to the KOR. Through the use of computational methods, we will screen a variety of chemical scaffolds to see how well they bind to the active pocket of the KOR and Mu Opioid Receptor. From these results, we will identify targets with high binding affinity to Kappa and low binding affinity to Mu. The identified compounds will then be screened for in vitro binding affinity to identify novel KOR selective ligands.

DeepMail Project Name: DeepMail
Short Project Name: DeepMail
Field of Science: Computer Science
Field of Science (if Other): NLP, ML, Deep Learning
PI Name: Micheal Marasco
PI Email: mmarasco@northwestern.edu
PI Organization: Northwestern University
PI Department: Farley Center for Entrepreneurship and Innovation
Join Date: Apr 27, 2017
Project Contact Email: mmarasco@northwestern.edu
Telephone Number: 847-467-6347
Project Description: To develop a contextual search technique on a given text corpus. The idea is to develop a search model using Deep Learning techniques and Natural Language Processing. More specifically, we are currently exploring Word Embedding techniques in NLP and Neural Network models like Word2Vec. The model would first train itself on the existing email corpus of a given user and then be able to provide search results based on contextual queries.

UNH-IMD Project-Name = UNH-IMD
Field-of-Science =
PI-Name =
PI-Email =
Organization/University =
Department =
Join-Date = April 28, 2017
Sponsor =
OSG-Sponsor-Contact =

BiomedInfo Your Name: Erik Wright
Your Email Address: eswright@pitt.edu
Project Name: Large-scale biomedical informatics
Short Project Name: BiomedInfo
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Erik Wright
PI Email: eswright@pitt.edu
PI Organization: University of Pittsburgh
PI Department: Biomedical Informatics
Join Date: Nov 22, 2017
Telephone Number: 412-383-4458
Project Description: Development and application of software tools for performing large-scale biomedical informatics on microbial genome sequence data.
DataSaoPaulo Project Name: DataSaoPaulo
Short Project Name: DataSaoPaulo
Field of Science: Education
Field of Science (if Other):
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: UITS
Telephone Number: 3172745260
Project Description: A project for teaching the grid computing component at Sao Paulo, Brazil
ddpscbioinfo
Project Name: Donald Danforth Plant Science Center Bioinformatics
Short Project Name: ddpscbioinfo
Field of Science: Botany
PI Name: Noah Fahlgren
PI Email: nfahlgren@danforthcenter.org
PI Organization: Donald Danforth Plant Science Center
PI Department: Bioinformatics
Project Contact: Noah Fahlgren
Project Contact Email: nfahlgren@danforthcenter.org
Telephone Number: 314-587-1676 
Project Description: The Donald Danforth Plant Science Center Bioinformatics project tracks Open Science Grid computing usage by Danforth Center researchers. Bioinformatics research at the Danforth Center largely focuses on plant genomics (genome sequencing, genetic analysis, transcript profiling, etc.) and high-throughput phenotyping (image analysis, genotype-phenotype association analysis, etc.).

 

nsides
Project Name: Data-driven drug effect discovery
Short Project Name: nsides
Field of Science: Biomedical research
PI Name: Nicholas Tatonetti
PI Email: nick.tatonetti@columbia.edu
PI Organization: Columbia University
PI Department: Biomedical Informatics
Join Date: June 9, 2017
Project Contact: Rami Vanguri
Project Contact Email: r.vanguri@columbia.edu
Telephone Number: 661-209-7825
Project Description: Using deep learning models to discover statistically significant drug effects using public drug surveillance datasets from the Federal Drug Administration.
staff

Group for Connect staff members

HASHA

Your Name: Brian Cheda
Your Email Address: bcheda@arcadia.edu
Project Name: HashAnalysis
Short Project Name: HASHA
Field of Science: Network Science
Field of Science (if Other): computer science
PI Name: Brian Cheda
PI Email: bcheda@arcadia.edu
PI Organization: Arcadia university
PI Department: Biology
Join Date: Dec 7, 2017
Project Contact: Brian Cheda
Project Contact Email: bcheda@arcadia.edu
Telephone Number: 8624445156
Project Description: Program uses NCBI's Entrez.efetch on the nucleotide database to take in large number of sequences and searches the sequences for palindromes ranging in size from 4 to 20 and appends the results to a list. The program then takes each palindrome and checks for its occurrence on the 11 genes of the influenza A virus's and outputs every match of the palindrome with relevant sequence Information.

electrolytes Project Name: electrolytes
Short Project Name: electrolytes
Field of Science: Physical Chemistry
PI Name: Jesse McDaniel
PI Email: jesse.mcdaniel@chemistry.gatech.edu
PI Organization: Georgia Institute of Technology
PI Department: Chemistry and Biochemistry
Join Date: June 29, 2017
Project Contact: Jesse McDaniel
Project Contact Email: jesse.mcdaniel@chemistry.gatech.edu
Telephone Number:
Project Description: Molecular Dynamics simulations of concentrated electrolyte mixtures both in bulk and at interfaces, and spectroscopic characterization of these systems. Electronic Structure calculations used to investigate specific interactions between liquid components

HRRRMining Project Name: Mining High Resolution Rapid Refresh Data
Short Project Name: HRRRMining
Field of Science: Earth Sciences
Field of Science (if Other):
PI Name: Brian Blaylock
PI Email: brian.blaylock@utah.edu
PI Organization: University of Utah
PI Department: Atmospheric Sciences
Join Date: June 28, 2017
Project Contact: Brian Blaylock
Project Contact Email: brian.blaylock@utah.edu
Telephone Number: 3852082300
Project Description: I have archived about 30TB (and growing) of output from NOAA's operational High Resolution Rapid Refresh model on an object storage archive system at Utah's Center for High Performance Computing. The challenge is to mine data from such a large data set. Open Science Grid may be a solution for processing this voluminous data set, if questions and data mining objectives can be broken into serial tasks.


SSGAforCSP Project Name: Steady State Genetic Algorithm (SSGA) for Crystal Structure Prediction (CSP)
Short Project Name: SSGAforCSP
Field of Science: Materials Science
PI Name: Julio Facelli
PI Email: julio.facelli@utah.edu
PI Organization: University of Utah
PI Department: Biomedical Informatics
Join Date: June 22, 2017
Project Contact: julio facelli
Project Contact Email: julio.facelli@utah.edu
Telephone Number: 8014856947
Project Description: This project will use the OSG to demonstrate the feasibility of using a new steady state genetic algorithm (SSGA), recently introduced by the MGAC collaboration, to predict the crystal structures of molecules of pharmaceutical interest. The OSG resources are ideal for this project because the SSGA requires a large number of independent energy calculations of candidate structures. These calculations for simple molecules will use the DFT approach, using software already available in the OSG.

IITPROSPECT

Project Name: PROSPECT experiment at IIT
Short Project Name: IITPROSPECT
Field of Science: Neutrino Physics
Field of Science (if Other):
PI Name: Bryce Littlejohn
PI Email: blittlej@iit.edu
PI Organization: Illinois Institite of Technology
PI Department: Physics
Join Date: June 23, 2017
Project Contact: Pranava Teja Surukuchi
Project Contact Email: psurukuc@hawk.iit.edu
Telephone Number: 6304232468
Project Description: Monte Carlo generation and data analysis for the PROSPECT experiment.

SpatialModeling Project Name: Bayesian Spatial Modeling
Short Project Name: SpatialModeling
Field of Science: Bioinformatics
PI Name: Brook Milligan
PI Email: brook@nmsu.edu
PI Organization: New Mexico State University
PI Department: Biology
Join Date: Jan 27, 2017
Project Contact: Brook Milligan
Project Contact Email: brook@nmsu.edu
Telephone Number: (575) 646-7980
Project Description: Developing software applications for probabilistic graph models, predominantly for spatially explicit modeling.
DTWclassifier

Project Name: Pattern classifier with DTW
Short Project Name: DTWclassifier
Field of Science: Neuroscience
PI Name: Luke Remage-Healey
PI Email: healeylab@gmail.com
PI Organization: University of Massachusetts Amherst
PI Department: Psychological and Brain Sciences
Join Date: June 29, 2017
OSG Sponsor Contact:
Project Contact: Matheus Lima
Project Contact Email: mmlima@umass.edu
Telephone Number: 4133366616
Project Description: Pattern classifier of neuronal responses with dynamic time warping as a distance measure.

EvolCE Project Name: Evolution in changing environments
Short Project Name: EvolCE
Field of Science: Evolutionary Biology
Field of Science (if Other):
PI Name: Davorka Gulisija
PI Email: davorka@sas.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Department of Biology
Join Date: June 28, 2017
Project Contact: Davorka Gulisija
Project Contact Email: davorka@sas.upenn.edu
Telephone Number: 6086957918
Project Description: Multi-locus simulations under periodic environments.
Specppxf Project Name: Spec ppxf
Short Project Name: Specppxf
Field of Science: Astrophysics
PI Name: Alabi Adebusola
PI Email: aalabi@ucsc.edu
PI Organization: UC Santa Cruz
PI Department: Department of Astronomy and Astrophysics
Join Date: July 5, 2017
Project Contact: Alabi Adebusola
Project Contact Email: aalabi@ucsc.edu
Telephone Number: 8312019579
Project Description: Robust statistical inference of the kinematics from astrophysical spectra using Monte Carlo methods
UserSchool2017 Project Name: OSG User School 2017
Short Project Name: UserSchool2017
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Tim Cartwright
PI Email: Tim Cartwright
PI Organization: University of Wisconsin Madison
PI Department: Computer Science
Join Date: July5, 2017
Project Description: Training project for OSG User School 2017


asurcosg Project Name: ASURC testing OSG integration with onprem clusters
Short Project Name: asurcosg
Field of Science: Computer Science
PI Name: Jay Etchings
PI Email: jetching@asu.edu
PI Organization: Arizona State University
PI Department: Research Computing
Join Date: July 10, 2017
Project Contact: Jonathan McNally
Project Contact Email: jmcnall3@asu.edu
Telephone Number: 4807272479
Project Description: Testing OSG integration with ASU HPC
EMODIS-NDVI

Project Name: EMODIS-NDVI
Short Project Name: EMODIS-NDVI
Field of Science: Geoscience
PI Name: Dayne Broderson
PI Email: dbbroderson@alaska.edu
PI Organization: University of Alaska Fairbanks
PI Department: Geographic Information Network of Alaska
Project Contact: Vanessa Raymond
Project Contact Email: vlraymond@alaska.edu
Telephone Number: 907-474-6182
Project Description: processing EMODIS NDVI using HTC

Biomim Project Name: Rational design of biomimetic electrocatalysts
Short Project Name: Biomim
Field of Science: Physical Chemistry
PI Name: Puja Goyal
PI Email: pgoyal@binghamton.edu
PI Organization: State University of New York at Binghamton
PI Department: Chemistry
Join Date: Aug 10, 2017
Project Contact Email: pgoyal@binghamton.edu
Telephone Number: 607-777-4308
Project Description: The project involves studies of substrate binding, electron and proton transport pathways and substrate release in enzymes that can catalyze the synthesis of fuels in photoelectrochemical cells. The insights obtained will guide the design of small molecule electrocatalysts in collaboration with experimentalists.
colorcat Project Name: The Evolution of Color Categories
Short Project Name: colorcat
Field of Science: Evolution
PI Name: Joshua B. Plotkin
PI Email: jplotkin@sas.upenn.edu
PI Organization: University of Pennsylvania
PI Department: Biology
Project Contact Email: crtwomey@sas.upenn.edu
Telephone Number: 781-864-8425
Join Date: Aug 18, 2017
Project Description: Different languages divide the visible light spectrum into words (e.g. "red," "green," "blue" ... in English) in different ways. However, despite the apparent freedom in assigning colors to different categories, there are clear universal patterns across languages in how they divide color space according to the number of color terms in the language. This pattern has now been empirically well established, however there remains a confusion of theories for why this pattern should exist at all. In fact, a simple, evolutionary model in tandem with a model of perceptual color space and color saliency, completely accounts for the observed universal patterns. We will use the open science grid to explore the parameter space of this model via many parallel, independent runs of the dynamics to find the best fit parameter values to the language data available.
ReABuncherRing Your Name: Robert Hipple
Your Email Address: hipple@msu.edu
Project Name: ReA Buncher Ring
Short Project Name: ReABuncherRing
Field of Science: Accelerator Physics
Field of Science (if Other):
PI Name: Phil Duxbury
PI Email: duxbury@msu.edu
PI Organization: Michigan State University
PI Department: Physics and Astronomy
Join Date: Dec 11, 2017
Project Contact: Robert Hipple
Project Contact Email: hipple@msu.edu
Telephone Number: 810-522-7759
Project Description: Design of a pre-RFQ buncher ring for ReA at FRIB
Fluka Your Name: Sunil Chitra
Your Email Address: schitra@bnl.gov
Project Name: FLUKA@NSLS2
Short Project Name: Fluka
Field of Science: Physics
Field of Science (if Other): Monte Carlo radiation transport
PI Name: Sunil Chitra
PI Email: schitra@bnl.gov
PI Organization: BNL
PI Department: Physics
Join Date: Dec 11, 2017
Project Description: FLUKA Monte Carlo calculations
Radlife Your Name: Neranjan (Suranga) Edirisinghe
Your Email Address: neranjan@gsu.edu
Project Name: Radiation and life
Short Project Name: Radlife
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Xiaochun H
PI Email: xhe@gsu.edu
PI Organization: Georgia State University
PI Department: Department of Physics and Astronomy
Join Date: Dec 12, 2017
Project Contact: Neranjan (Suranga) Edirisinghe
Project Contact Email: neranjan@gsu.edu
Telephone Number: 4044134441
Project Description: study of the real-time monitoring of space and earth weather, cosmic ray radiation and cancer formation, cosmic ray muon tomography, etc...
UPCDOSAR Your Name: Rob Quick
Your Email Address: rquick@iu.edu
Project Name: UNAL-PCM-CO-DOSAR
Short Project Name: UPCDOSAR
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: Research Technologies
Join Date: Dec 13, 2017
Project Contact: Oscar David Arbelaez Echeverry
Project Contact Email: odarbelaeze@unal.edu.co
Telephone Number: 317-274-5260
Project Description: Researchers from UNAL will be using OSG and running example jobs on Monte Carlo simulations, they will be submitting jobs related to bit patterned media, following this work http://www.sciencedirect.com/science/article/pii/S1386947715303222, and will also be submitting jobs related to research in critical phenomena, similar to what was done here: http://www.sciencedirect.com/science/article/pii/S0304885316324933?via%3Dihub and here http://www.sciencedirect.com/science/article/pii/S0304885316320169?via%3Dihub

popage Your Name: Benjamin Rose
Your Email Address: brose3@nd.edu
Project Name: Local Stellar Population Age
Short Project Name: popage
Field of Science: Astrophysics
Field of Science (if Other):
PI Name: Benjamin Rose
PI Email: brose3@nd.edu
PI Organization: University of Notre Dame
PI Department: Physics
Join Date: Jan 5, 2018
Telephone Number: 559-313-3815
Project Description: Using FSPS estimate the age of a stellar population from its SED. This will be applied to improving SN Ia distance measurements.
lychrelsearch Your Name: James P. Howard, II
Your Email Address: james.howard@jhu.edu
Project Name: Lychrel Number Verification and Search
Short Project Name: lychrelsearch
Field of Science: Mathematics
Field of Science (if Other): 11100 Johns Hopkins Road, MS 5-118
PI Name: James P. Howard, II
PI Email: james.howard@jhu.edu
PI Organization: The Johns Hopkins University
Join Date: Dec 18, 2017
Telephone Number: 4105054199
Project Description: This project will search for and perform limited verification of potential Lychrel numbers. A Lychrel number is a natural number that through reversing its digits and adding them together, repeatedly, does not form a palindrome.

bdttpdblend Your Name: Mike Henry
Your Email Address: mikehenry@boisestate.edu
Project Name: Structural Relationship Between Charge Transport in Organic Photovoltaics
Short Project Name: bdttpdblend
Field of Science: Materials Science
Field of Science (if Other):
PI Name: Eric Jankowski
PI Email: erick.jankowski@boisestate.edu
PI Organization: Boise State University
PI Department: Micron School of Material Science and Engineering
Join Date: Jan 10, 2018
Project Contact: Mike Henry
Project Contact Email: mikehenry@boisestate.edu
Telephone Number: 480-628-9748
Project Description: We will utilize the Open Science Grid to conduct quantum chemical calculations and kinetic Monte Carlo simulations of organic photovoltaic morphologies. We have a simulation pipeline that enables high throughput material screening for chemistires and processing conditions relevent for organic photovoltaic devices. We will use molecular configurations from previously simulated morphologies, generated with molecular dynamics code accelerated by GPUs.


panorama

Your Name: Georgios Papadimitriou
Your Email Address: georgpap@isi.edu
Project Name: Panorama360
Short Project Name: panorama
Field of Science: Computer Science
Field of Science (if Other):
PI Name: Georgios Papadimitriou
PI Email: georgpap@isi.edu
PI Organization: University of Southern California
PI Department: Computer Science
Join Date: Jan 11, 2018
Telephone Number: 323-449-8345
Project Description: Performance Data Capture and Analysis for End-to-end Scientific Workflows

Shortrunjobs Your Name: Donny Shrum
Your Email Address: dcshrum@fsu.edu
Project Name: RCC at FSU
Short Project Name: Shortrunjobs
Field of Science: Education
Field of Science (if Other):
PI Name: Donald Shrum
PI Email: dcshrum@fsu.edu
PI Organization: Florida State University
PI Department: Research Computing Center
Join Date: Jan 16, 2018
Telephone Number: 850-567-2484
Project Description: I'm working with researchers at FSU to show them how to use docker, singularity and OSG and I'd like to be able to submit an example job during some tutorials. I'll keep the runtime to just a few seconds so as to not use up resources.

Dissertation Your Name: Ann Arthur
Your Email Address: ann.arthur@huskers.unl.edu
Project Name: Enhancing Ability Measurement and Estimation With Response Strategies
Short Project Name: Dissertation
Field of Science: Educational Psychology
Field of Science (if Other):
PI Name: Ann Arthur
PI Email: ann.arthur@huskers.unl.edu
Join Date: Jan 18, 2018
Project Contact Email: ann.arthur@huskers.unl.edu
Telephone Number: 402-206-4083
Project Description: This study involves the use of Monte Carlo simulation methods to test the use of mixture models to improve the estimation of a latent ability.
psychosisfmri Your Name: Vasco De Sa Nunes Correia Diogo
Your Email Address: diogo.v@husky.neu.edu
Project Name: Identification of Distinct Functional Subtypes of Psychosis
Short Project Name: psychosisfmri
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Vasco De Sa Nunes Correia Diogo
PI Email: diogo.v@husky.neu.edu
PI Organization: Northeastern University
PI Department: College of Science
Join Date: Jan 23, 2018
Telephone Number: 6178202480
Project Description: This project will make use of fMRI data of psychotic patients in order to parse heterogeneity in functional activity across multiple diagnosis. The need for computing power results from the need to preprocess the fMRI, from which we want to obtain a region level connectivity matrix for each of the approximately 1200 subjects that will be analyzed.
MOmega Your Name: Maxene Rae K Meier
Your Email Address: maxene.meier@ucdenver.edu
Project Name: Meier's Omega
Short Project Name: MOmega
Field of Science: Biostatistics
Field of Science (if Other): Biostatistics
PI Name: Maxene Meier
PI Email: maxene.meier@ucdenver.edu
PI Organization: University of Colorado, Anschutz Medical Campus
PI Department: School of Public Health
Join Date: Jan 24, 2018
Project Description: Looking at agreement of African triage data using Meier's Omega
sugwg Your Name: Duncan Brown
Your Email Address: dabrown@syr.edu
Project Name: Syracuse University Gravitational Wave Group
Short Project Name: sugwg
Field of Science: Astrophysics
PI Name: Duncan Brown
PI Email: dabrown@syr.edu
PI Organization: Syracuse University
PI Department: Physics
Join Date: Jan 26, 2017
Project Contact: Duncan Brown
Project Contact Email: dabrown@syr.edu
Telephone Number: 3154435993
Project Description: Gravitational-wave astronomy and astrophysics.
NDSU-CCAST Your Name: Nick Dusek
Your Email Address: nicholas.dusek@ndsu.edu
Project Name: OSG onboarding for NDSU CCAST users
Short Project Name: NDSU-CCAST
Field of Science: Computer Science
Field of Science (if Other):
PI Name: Nick Dusek
PI Email: nicholas.dusek@ndsu.edu
PI Organization: North Dakota State University
PI Department: Center for Computationally Assisted Science and Technology
Join Date:Feb 6, 2018
Project Contact Email:
Telephone Number: 7012318303
Project Description: As a new contributor of resources to OSG, we would like to introduce our users to the grid and help them transition some of their jobs to OSG resources, as appropriate.
OSURHIT Your Name: Ulrich Heinz
Your Email Address: heinz.9@osu.edu
Project Name: OSU Relativistic Heavy-Ion Theory
Short Project Name: OSURHIT
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Prof. Ulrich Heinz
PI Email: heinz.9@osu.edu
PI Organization: The Ohio State University
PI Department: Physics Department
Join Date: Feb 6, 2018
Telephone Number: 614-688-5363
Project Description: Experimentally calibrated event-by-event simulations of high-energy heavy-ion collisions. Numerical implementation of optimized dissipative relativistic fluid dynamics.
GPCRbinders Your Name: Christopher Bahl
Your Email Address: chris.bahl@proteininnovation.org
Project Name: design of conformationally selective GPCR affinity reagents
Short Project Name: GPCRbinders
Field of Science: Structural Biology
Field of Science (if Other):
PI Name: Christopher Bahl
PI Email: cdbahl@gmail.com
PI Organization: Institute for Protein Innovation
PI Department: Protein Design
Join Date: Feb 7, 2018
Telephone Number: 603-502-1227
Project Description: Computational design of protein-based affinity reagents capable of binding to GPCRs and inducing an agonized or antagonize state, or binding in a function-independent manner.
Mapping Your Name: Liang Shi
Your Email Address: lshi4@ucmerced.edu
Project Name: Development of ab-initio-based spectroscopic maps
Short Project Name: Mapping
Field of Science: Physical Chemistry
Field of Science (if Other):
PI Name: Liang Shi
PI Email: lshi4@ucmerced.edu
PI Organization: UC Merced
PI Department: Chemistry and Chemical Biology
Join Date: Feb 9, 2018
Telephone Number: 209-201-2409
Project Description: Spectroscopic maps are widely used in condensed-phase vibrational spectroscopic simulations. We aim to develop ab-initio-based maps for water, and more complex systems.
UHITSACI Your Name: Sean Cleveland
Your Email Address: seanbc@hawaii.edu
Project Name: University of Hawaii - Cyberinfrastructure
Short Project Name: UHITSACI
Field of Science: Biology
Field of Science (if Other):
PI Name: Sean Cleveland
PI Email: seanbc@hawaii.edu
PI Organization: University of Hawaii
PI Department: Cyberinfrastructure
Join Date: Feb 15, 2018
Project Contact: Sean Cleveland
Project Contact Email: seanbc@hawaii.edu
Telephone Number: 406-579-4945
Project Description: A project to help get users from UH onto open science grid.
dynamo Your Name: Asher Wasserman
Your Email Address: adwasser@ucsc.edu
Project Name: Dynamical Modeling of Elliptical Galaxies
Short Project Name: dynamo
Field of Science: Astrophysics
PI Name: Asher Wasserman
PI Email: adwasser@ucsc.edu
PI Organization: University of California, Santa Cruz
PI Department: Astronomy and Astrophysics
Join Date: Feb 26, 2018
Project Description: Equilibrium dynamical models are useful tools for inferring the mass distribution of galaxies and determining the amount and structure of their dark matter halos. The goal of this work is to explore degeneracies in the modeling of elliptical galaxies to evaluate how well we can understand properties such as their dark matter density distribution, the mass-to-light ratio of their stellar populations, and the orbital anisotropy of various tracer populations.

networkdist Your Name: James Saxon
Your Email Address: jsaxon@uchicago.edu
Project Name: Network Distance Traversal
Short Project Name: networkdist
Field of Science: Other
Field of Science (if Other): Geography
PI Name: James Saxon
PI Email: jsaxon@uchicago.edu
PI Organization: University of Chicago
PI Department: Harris School
Join Date: Mar 2, 2018
Telephone Number: 484-843-5363
Project Description: Measuring driving and walking times for very large matrices of points.

plantGRN Your Name: Ji Huang
Your Email Address: jh12u@my.fsu.edu
Project Name: Gene regulatory network in plant
Short Project Name: plantGRN
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Karen McGinnis
PI Email: mcginnis@bio.fsu.edu
PI Organization: Florida State University
PI Department: Biological Science
Join Date: March 8, 2018
Telephone Number: (850) 645-8814
Project Description: With the emergence of massively parallel sequencing, genome-wide expression data production has reached an unprecedented level. This abundance of data has greatly facilitated maize research, but may not be amenable to traditional analysis techniques that were optimized for other data types. Using publicly available data, a Gene Co-expression Network (GCN) can be constructed and used for gene function prediction, candidate gene selection and improving understanding of regulatory pathways. Several GCN studies have been done in maize, mostly using microarray datasets. To build an optimal GCN from plant materials RNA-Seq data, parameters for expression data normalization and network inference were evaluated. We previously constructed an optimized gene coexpression network for maize. In this project, we want to build gene regulatory networks for Arabidopsis, rice maize, and sorghum.
HCBData

Project Name: Human Centered Big Data
Short Project Name: HCBData
Field of Science: Computer Science
Field of Science (if Other):
PI Name: Brad Minnery
PI Email: brandon.minnery@wright.edu
PI Organization: Wright State Research Institute
Join Date: Mar 14, 2018
Telephone Number: 937-705-1020
Project Description: The project aims to achieve explainable machine learning (ML) through the integration of structured semantic data with the inputs, outputs and hidden layers of deep learning systems. The proliferation of explicitly structured semantic data has occurred in parallel with the emergence of powerful ML algorithms, particularly deep neural networks (DNNs), whose internal layers encode information implicitly. This research attempts to bridge the gap between explicit, easy-to-understand semantic information and implicit, difficult-to-understand features of a deep learning system to achieve transparency and trust in an algorithm's reasoning across multiple layers.

sweeps

Project Name: Segregation_and_sorting_sweeps
Short Project Name: sweeps
Field of Science: Other
Field of Science (if Other): systems biology
PI Name: Murat Acar
PI Email: murat.acar@yale.edu
PI Organization: Yale University
PI Department: Molecular Cellular and Developmental Biology
Join Date: Mar 19, 2018
Project Contact: Ruijie Song
Project Contact Email: r.song@yale.edu
Telephone Number: 203-737-3255
Project Description: Running simulations using parameters sampled from large ranges

cyverse Your Name: Ian McEwen
Your Email Address: mian@cyverse.org
Project Name: CyVerse
Short Project Name: cyverse
Field of Science: Organizational
Field of Science (if Other):
PI Name: Nirav Merchant
PI Email: nirav@email.arizona.edu
PI Organization: University of Arizona
PI Department: BIO5/CyVerse
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Ian McEwen
Project Contact Email: mian@cyverse.org
Telephone Number: 520-621-8379
Project Description: CyVerse is a cyberinfrastructure project (formerly iPlant Collaborative). This project will be an umbrella for initial testing of OSG integration, with the hope that eventually we will instead ask users for their own projects to submit with jobs.

polymer Your Name: rajmohan
Your Email Address: rajumenr@ou.edu
Project Name: polymer
Short Project Name: polymer
Field of Science: Materials Science
Field of Science (if Other):
PI Name: Dr.Jivtesh Garg
PI Email: garg@ou.edu
PI Organization: University of Oklahoma
PI Department: Mechanical Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: rajmohan muthaiah
Project Contact Email: rajumenr@ou.edu
Telephone Number: 4096651351
Project Description: Investigate the thermal conductivity of polymer and polymer
composites using MD simulation
EAoCD Your Name: SURYAPRASANNA KUMAR BALUSU
Your Email Address: balusu@mail.usf.edu
Project Name: Econometric analysis of crash data
Short Project Name: EAoCD
Field of Science: Engineering
Field of Science (if Other): Civil Engineering
PI Name: Suryaprasanna kumar balusu
PI Email: balusu@mail.usf.edu
PI Organization: University of South Florida
PI Department: Department of Civil and Environmental Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 8135085279
Project Description: Our project is on the econometric modeling of crash
frequency and passenger injury severity.
DiffCorr Your Name: Jacek Herbrych
Your Email Address: jherbryc@utk.edu
Project Name: Dynamics of electrons with different degree of correlations
Short Project Name: DiffCorr
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Jacek Herbrych
PI Email: jherbryc@utk.edu
PI Organization: University of Tennessee
PI Department: Department of Physics and Astronomy
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: +1 865-974-5978
Project Description: The aim of the project is to study non-equilibrium dynamics
of strongly correlated electrons with different degree of correlations.
GlobalDH Your Name: Kang Wang
Your Email Address: Kang.Wang@colorado.edu
Project Name: GlobalDataHarvest
Short Project Name: GlobalDH
Field of Science: Earth Sciences
Field of Science (if Other):
PI Name: KANG WANG
PI Email: Kang.Wang@colorado.edu
PI Organization: UNIVERSITY of COLORADO at BOULDER
PI Department: INSTAAR
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number:
Project Description: Test a tool to deal with global data sets.
cellpainting

Your Name: Shantanu Singh
Your Email Address: shsingh@broadinstitute.org
Project Name: Experiments in image-based profiling of genes, compounds, and
diseases
Short Project Name: cellpainting
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Shantanu Singh
PI Email: shsingh@broadinstitute.org
PI Organization: Broad Institute
PI Department: Imaging Platform
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number:
Project Description: We aim to pioneer a new era where images of cells become
powerful, rich, unbiased data sources for comparing cell state. We predict that
doing so will allow rapid and inexpensive interrogation of the impact of genetic
or chemical perturbations on a cell - useful for a variety of important
applications in biology.

In morphological profiling, we construct signatures of genes, chemicals, or
other treatments by measuring the structural changes in treated cells, as
observed under a microscope. Cells are stained with fluorescent dyes that mark
several constituents, producing images from which hundreds of distinct
measurements can be extracted at the single cell level. We will carry out
proof-of-principle computational experiments using morphological profiling in
diverse and significant applications, such as connecting unannotated genes to
known pathways, identifying signatures of disease, predicting a small molecule's
mechanism of action, enriching chemical libraries for diverse bioactivity, and
identifying new compounds or materials with desired phenotypic effects. Despite
our successes in this field so far, the methods development for morphological
profiling is a wild frontier: novel methods are used but not compared,
integration with other data types (such as transcriptomics) has not
been explored, and deep learning is not yet leveraged to its potential. We will
continue to push forward the technology development needed in our driving
biological projects. We will make data and code publicly available to catalyze
the field. Ultimately, we aim to develop best practices for the field and create
the foundation for user-friendly, open-source tools to discover and quantify
relationships among genetic or chemical perturbations and disease state, across
a diverse array of biological areas of study and disease areas.

FDDRCS Your Name: Alessandro Peri
Your Email Address: alessandro.peri@colorado.edu
Project Name: Financial Development, Default Rates and Corporate Credit Spreads
Short Project Name: FDDRCS
Field of Science: Economics
Field of Science (if Other): Macroeconomics
PI Name: Alessandro Peri
PI Email: alessandro.peri@colorado.edu
PI Organization: CU Boulder
PI Department: Economics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email: alessandro.peri@colorado.edu
Telephone Number: 7204017495
Project Description: The Project entails the estimation of a general equilibrium
heterogenous firms dynamic model with default. The Project is related to the
paper "Financial Development, Default Rates, and Credit Spreads" (abstract
below), at the moment R&R at the Economic Journal.
PNGtemplate Your Name: Yukai Zou
Your Email Address: zou75@purdue.edu
Project Name: PNG population-specific brain template
Short Project Name: PNGtemplate
Field of Science: Medical Imaging
Field of Science (if Other):
PI Name: Joseph Rispoli
PI Email: jrispoli@purdue.edu
PI Organization: Purdue University
PI Department: Biomedical Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Yukai Zou
Project Contact Email: zou75@purdue.edu
Telephone Number: 4153210864
Project Description: This project aims at creating population-specific templates
that target adolescent athletes, based on the T1-weighted images from Purdue
Neurotrauma Group (PNG) longitudinal datasets.
SwatCompNeuro Your Name: Joshua Goldwyn
Your Email Address: jgoldwyn@swarthmore.edu
Project Name: Swarthmore College Computational Neuroscience
Short Project Name: SwatCompNeuro
Field of Science: Other
Field of Science (if Other): Computational Neuroscience
PI Name: Joshua Goldwyn
PI Email: jgoldwyn@swarthmore.edu
PI Organization: Swarthmore College
PI Department: Mathematics and Statistics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Joshua Goldwyn
Project Contact Email: jgoldwyn@swarthmore.edu
Telephone Number: 610-957-6059
Project Description: Computational neuroscience research at Swarthmore College
humanobjrecog Your Name: Tal Golan
Your Email Address: tg2632@columbia.edu
Project Name: Evaluating computational models of human visual object recognition
Short Project Name: humanobjrecog
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Nikolaus Kriegeskorte
PI Email: n.kriegeskorte@columbia.edu
PI Organization: Columbia University in the City of New York
PI Department: Zuckerman Institute
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Tal Golan
Project Contact Email: tg2632@columbia.edu
Telephone Number: 646-633-2627
Project Description: Deep neural networks have recently met human-level
performance in basic object recognition tasks. However, do they solve object
recognition using the same underlying transformations that humans apply? In this
project, we compare the behavioral and physiological responses of human subjects
with the predictions of a range of deep neural networks of varying complexity,
aiming to explore and improve the biological compatibility of these
computational models.

chemml Your Name: Geoffrey Hutchison
Your Email Address: geoffh@pitt.edu
Project Name: ML Chemistry
Short Project Name: chemml
Field of Science: Physical Chemistry
Field of Science (if Other):
PI Name: Geoffrey Hutchison
PI Email: geoffh@pitt.edu
PI Organization: University of Pittsburgh
PI Department: Chemistry
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 412-648-0492
Project Description: We are using data-driven machine learning - particularly
reinforcement learning as surrogates for quantum chemical methods. Data from the
project will be made open to improve existing quantum ML methods as well as next
generation atomistic force fields.
RutgersOARC Your Name: Balamurugan Desinghu
Your Email Address: dmbala@gmail.com
Project Name: Rutgers Office of Advanced Research Computing - OSG Users
Short Project Name: RutgersOARC
Field of Science: Multidisciplinary
Field of Science (if Other):
PI Name: Bala Desinghu
PI Email: bala.desinghu@rutgers.edu
PI Organization: Rutgers University
PI Department: Office of Advanced Research Computing
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: (973)-972-3348
Project Description: Initial startup project for Rutgers researchers to do DHTC
on the OSG.
SMOTNT Your Name: Tongji Xing
Your Email Address: txing@dls.rutgers.edu
Project Name: SMOTNT_osg
Short Project Name: SMOTNT
Field of Science: Bioinformatics
Field of Science (if Other):
PI Name: Premal Shah
PI Email: premal.shah@rutgers.edu
PI Organization: Rutgers University
PI Department: Genetics Department
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Tongji Xing
Project Contact Email: txing@dls.rutgers.edu
Telephone Number: 7043078170
Project Description: Current model tracks the status of every single mRNA,
ribosome, tRNA molecules during transcription and translation processes. The
activities of these molecules are mainly governed by experimentally determined
parameters such as their abundances and diffusion rates, as well as
gene-specific rates for transcription, mRNA decay and translation.
parenproject Your Name: James Simon Richard
Your Email Address: richard.james2021@istemghs.org
Project Name: Finding the Size of a Set in Bijection with the Set of All
Possible Parenthesis Forms
Short Project Name: parenproject
Field of Science: Mathematics
Field of Science (if Other):
PI Name: James Simon Richard
PI Email: richard.james2021@istemghs.org
PI Organization: Geauga iSTEM Early College High School
PI Department: Math Club
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: James Simon Richard
Project Contact Email: richard.james2021@istemghs.org
Telephone Number: 440-942-5765
Project Description: In this project, we have defined a set which is in
bijection with the set of all possible parenthesis forms. We will be using OSG
to find the size of several related sets so that we can conjecture, and
hopefully prove an equation that returns the size of the set of all parenthesis
forms with a specific number of terms.
SparseNeuro Your Name: Christopher Cox
Your Email Address: chriscox@lsu.edu
Project Name: Discovering distributed neurocognitive representations in the
brain with structured sparsity
Short Project Name: SparseNeuro
Field of Science: Other
Field of Science (if Other): Cognitive Neuroscience
PI Name: Christopher Cox
PI Email: chriscox@lsu.edu
PI Organization: Louisiana State University
PI Department: Psychology
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Christopher Cox
Project Contact Email: chriscox@lsu.edu
Telephone Number: 1-847-347-9784
Project Description: High level cognitive is supported by many brain regions
collaborating in complex networks. In particular, the representation of meaning
(semantics) and utilizing this knowledge in context has the potential to involve
the whole brain to some extent. By using machine learning techniques that
discover solutions with anatomically and temporally structured sparsity, we aim
to test representational predictions from cognitive psychology using whole brain
neuroimaging datasets.
MDSimulation Your Name: Mehdi Maleki Sanukesh
Your Email Address: MehdiMalekiSanukesh@creighton.edu
Project Name: Molecular Dynamics Simulation
Short Project Name: MDSimulation
Field of Science: Physics
Field of Science (if Other): computational physics
PI Name: Patricia Soto
PI Email: PatriciaSoto@creighton.edu
PI Organization: Creighton University
PI Department: Physics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Mehdi Maleki Sanukesh
Project Contact Email: MehdiMalekiSanukesh@creighton.edu
Telephone Number: 7376009803
Project Description: Optimizing the time step as function of temperature.
Comparing different integration methods and their effect on boiling point.
BDEML Your Name: Robert Paton
Your Email Address: robert.paton@colostate.edu
Project Name: prediction of bond dissocation energy
Short Project Name: BDEML
Field of Science: Chemistry
Field of Science (if Other):
PI Name: ROBERT PATON
PI Email: robert.paton@colostate.edu
PI Organization: Colorado State University
PI Department: Chemistry
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Robert S Paton
Project Contact Email: robert.paton@colostate.edu
Telephone Number: 9704917746
Project Description: Using machine learning to predict bond dissociation
energies of organic molecules and, inter-alia, the primary site of metabolic
oxidation. We aim to construct a large data-set (>10,000) of bond dissociation
energies for many molecules using electronic structure theory, use for
training/testing the model.
jmkidney Your Name: Kristen Campbell
Your Email Address: kristen.campbell@ucdenver.edu
Project Name: Joint modeling of interval censored and longitudinal outcomes in
kidney transplantation patients
Short Project Name: jmkidney
Field of Science: Statistics
Field of Science (if Other):
PI Name: Elizabeth Juarez-Colunga
PI Email: elizabeth.juarez-colunga@ucdenver.edu
PI Organization: University of Colorado Denver
PI Department: Biostatistics and Informatics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: PI
Project Contact Email: elizabeth.juarez-colunga@ucdenver.edu
Telephone Number: (303)724-6971
Project Description: We are developing a new joint modeling technique for a
heavily interval censored survival outcome and longitudinal outcome with high
measurement error. We plan to run our simulations on osg connect, which use
simulated data to check different properties of the model.
schwinger Your Name: Ahmed Akhtar
Your Email Address: a1akhtar@ucsd.edu
Project Name: Disordered Massless Schwinger Model
Short Project Name: schwinger
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Ahmed Akhtar
PI Email: a1akhtar@ucsd.edu
PI Organization: UC San Diego
PI Department: Physics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 7739432236
Project Description: I'm doing various numerical analyses of the disordered
massless Schwinger model. In particular, I am probing the system for evidence of
many-body localization in specified parameter regimes. Thus, my work involves
generating the spectrum of many different disorder realizations: diagonalizing
lots of (potentially big, but sparse) Hermitian matrices. Also, I am doing some
work using matrix product states, which involves diagonalizing big matrices too.
ppsa Your Name: Irem Altan
Your Email Address: ia41@duke.edu
Project Name: Percolation and Protein Self-Assembly
Short Project Name: ppsa
Field of Science: Chemistry
Field of Science (if Other):
PI Name: Irem Altan
PI Email: ia41@duke.edu
PI Organization: Duke University
PI Department: Chemistry
Join Date: July 30, 2018
Sponsor:
OSG Sponsor Contact:
Project Contact: Irem Altan
Project Contact Email: ia41@duke.edu
Telephone Number: (919) 660-1605
Project Description: Calculating critical exponents of the percolation threshold and understanding protein self-assembly via coarse-grained simulations of patchy particles
rappdti Your Name: Celia Litovsky
Your Email Address: litovsky@jhu.edu
Project Name: DTI-CNLR
Short Project Name: rappdti
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Brenda Rapp
PI Email: brapp1@jhu.edu
PI Organization: Johns Hopkins University
PI Department: Cognitive Science
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Celia Litovsky
Project Contact Email: litovsky@jhu.edu
Telephone Number: 2058621425
Project Description: Diffusion tensor imaging analysis of dysgraphic stroke patients
CLAS12 Your Name: Maurizio Ungaro
Your Email Address: ungaro@jlab.org
Project Name: CLAS12
Short Project Name: CLAS12
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Maurizio Ungaro
PI Email: ungaro@jlab.org
PI Organization: Jefferson Laboratory
PI Department: Physics Hall-B
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 17572697578
Project Description: Simulations for CLAS12 experiments.
lsst

Your Name: Chris Walter
Your Email Address: chris.walter@duke.edu
Project Name: LSST at Duke University
Short Project Name: lsst
Field of Science: Astrophysics
Field of Science (if Other):
PI Name: Chris Walter
PI Email: chris.walter@duke.edu
PI Department: Physics
Join Date:
Project Contact:
Project Contact Email:
Telephone Number: 19196602535
Project Description: The Large Synoptic Survey Telescope (LSST) is a giant telescope that will be located in Chile and is designed to make a 10 year, three dimensional survey of the entire visible sky. In LSST, we will focus on examining billions of galaxies, along with supernovae and other astronomical probes to try to determine the nature of the mysterious "Dark Energy" which is unaccountably causing the universe to pushed apart at a faster and faster rate.

lsst

Your Name:
Your Email Address:
Project Name: LSST
Short Project Name: lsst
Field of Science: Astrophysics
Field of Science (if Other):
PI Name:
PI Email:
PI Department:
Join Date:
Project Contact:
Project Contact Email:
Telephone Number:
Project Description: The Large Synoptic Survey Telescope (LSST) is a giant telescope that will be located in Chile and is designed to make a 10 year, three dimensional survey of the entire visible sky.

CatalystHTVS Your Name: Tzuhsiung yang
Your Email Address: nickyang@mit.edu
Project Name: High throughput virtual screening of molecular catalysts
Short Project Name: CatalystHTVS
Field of Science: Physical Chemistry
Field of Science (if Other):
PI Name: Heather J. Kulik
PI Email: nickyang@mit.edu
PI Organization: Massachusetts Institution of Technology
PI Department: Chemical Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Tzuhsiung Yang
Project Contact Email: nickyang@mit.edu
Telephone Number: 6086983508
Project Description: Using high throughput computing to screen molecular
catalysts for energy fuel conversion based on experimental database or in-silico
generated structures. In the next stage, the output from HTC calculations will
be used to train machine learning models to allow faster and higher throughput
molecular catalyst design.
DOSAR Your Name: Rob Quick
Your Email Address: rquick@iu.edu
Project Name: DOSAR
Short Project Name: DOSAR
Field of Science: Education
Field of Science (if Other):
PI Name: Rob Quick
PI Email: rquick@iu.edu
PI Organization: Indiana University
PI Department: UITS
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 3172745260
Project Description: The Distributed Organization for Scientific and
Academic Research (DOSAR) is a 'grass-roots' grid organization that
focuses on community and campus based grids and promotes a wide range of
interdisciplinary and educational activities within the organization and
its member institutions. The purpose of this OSGConnect project is to
give permanent working accounts to students that complete an HTC
training program sponsored by the DOSAR project and would like to
continue doing research after the schools have ended.

CSUNDA Your Name: Anura Jayasumana
Your Email Address: Anura.Jayasumana@Colostate.edu
Project Name: Network Data Analytics
Short Project Name: CSUNDA
Field of Science: Network Science
Field of Science (if Other):
PI Name: Anura Jayasumana
PI Email: Anura.Jayasumana@Colostate.edu
PI Organization: Colorado State University
PI Department: Electrical & Computer Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email: Anura.Jayasumana@Colostate.edu
Telephone Number: 970-491-7855
Project Description: The project aims to develop fundamentals, algorithms and
techniques to measure, model and detect characteristics and patterns of networks
and data in the form of networks.
WRFmodelonHTC Your Name: Roberto Villegas-Diaz
Your Email Address: roberto.villegasdiaz@sdstate.edu
Project Name: Weather Research and Forecasting (WRF) model on a HTC system
Short Project Name: WRFmodelonHTC
Field of Science: Other
Field of Science (if Other): Atmospheric Science
PI Name: Roberto Villegas-Diaz
PI Email: roberto.villegasdiaz@sdstate.edu
PI Organization: South Dakota State University
PI Department: University Networking and Research Computing
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 6056912406
Project Description: This project is intended to explorer the feasibility of
executing weather simulations on a High Throughput system using the Weather
Research and Forecasting (WRF) model.
ASURSCTEST Your Name: Johnathan Lee
Your Email Address: johnathan.lee@asu.edu
Project Name: ASU Research Computing
Short Project Name: ASURSCTEST
Field of Science: Other
Field of Science (if Other): General
PI Name: johnathan.lee@asu.edu
PI Email: johnathan.lee@asu.edu
PI Organization: ASU
PI Department: OKED
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number:
Project Description: Testing for Arizona Research Computing.
BGUOptics Your Name: Zev Montz
Your Email Address: zevmontz@gmail.com
Project Name: BGU optics research team
Short Project Name: BGUOptics
Field of Science: Physics
Field of Science (if Other): Optics
PI Name:
PI Email:
PI Organization: Ben Gurion University
PI Department: Department of Electrical and Computer Engineering
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Zev Montz
Project Contact Email: zevmontz@gmail.com
Telephone Number: 97258793497
Project Description: Research in the field of lasers and nonlinear optics for
academic purposes.
actRecog Your Name: Suneeta Godbole
Your Email Address: sgodbole@ucsd.edu
Project Name: Processing Accelerometer Data for Activity Recognition
Short Project Name: actRecog
Field of Science: Statistics
Field of Science (if Other):
PI Name: Loki Natarajan
PI Email: lnatarajan@ucsd.edu
PI Organization: UCSD
PI Department: Family Medicine and Public Health
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Lindsay Dillon
Project Contact Email: ldillon@eng.ucsd.edu
Telephone Number: 858-534-9329
Project Description: Applying the Two-level Behavior Classification package in R
to hertz level accelerometer data for activity classification
ExoplanetaryACS Your Name: Ehsan Gharib Nezhad
Your Email Address: e.gharibnezhad@asu.edu
Project Name: EXOACS
Short Project Name: ExoplanetaryACS
Field of Science: Astrophysics
Field of Science (if Other):
PI Name: Michael R. Line
PI Email: mrline@asu.edu
PI Organization: Arizona State University
PI Department: School of Earth and Space Exploration
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number:
Project Description: In this project, the absorption cross section (or molecular
opacity) and important exoplanetary atmospheric molecules will be generated.
clas12MC Your Name: Maurizio Ungaro
Your Email Address: ungaro@jlab.org
Project Name: clas12simulations
Short Project Name: clas12MC
Field of Science: Nuclear Physics
Field of Science (if Other):
PI Name: Maurizio Ungaro
PI Email: ungaro@jlab.org
PI Organization: Jefferson Lab
PI Department: Physics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email: ungaro@jlab.org
Telephone Number: +1 757 269-7578
Project Description: Monte Carlo Simulation of the CLAS12 detector at Jefferson
Lab.
SMRCNTP our Name: Joseph Yelk
Your Email Address: joseph.yelk@colorado.edu
Project Name: SImulations of Monomer Nucleic Acid Stacking
Short Project Name: SMRCNTP
Field of Science: Biophysics
Field of Science (if Other):
PI Name: Matt Glaser
PI Email: Matthew.glaser@colorado.edu
PI Organization: University of Colorado Boulder
PI Department: Physics
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Joseph Yelk
Project Contact Email: joseph.yelk@colorado.edu
Telephone Number: 9202535789
Project Description: We are exploring the free energy landscape of stacking and
columnar liquid assembly in condensed phases of monomer nucleic acids such as
ATP and TTP using enhanced sampling methods. We are validating our methods by
direct comparison with recent experimental studies of these materials. This work
is of relevance to the prebiotic appearance of information carrying polymers
such as DNA and RNA.

UOGI2SDMZ Your Name: Jose Dante Santiago
Your Email Address: jdsantiago@triton.uog.edu
Project Name: Upgrading the University of Guam Network to Connect to Internet2 and Create a Science DMZ
Short Project Name: UOGI2SDMZ
Field of Science: Other
Field of Science (if Other): Information Technology
PI Name: Rommel Hidalgo
PI Email: rommel@uog.edu
PI Organization: University of Guam
PI Department: Office of Information Technology
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: UOG NOC Team
Project Contact Email: uognoc@triton.uog.edu
Telephone Number: 671-735-2645
Project Description: This project will enable the design and implementation of a network that supports data-intensive research. The project, however, is a network upgrade activity and not data intensive on its own.
swipnanobio Your Name: Randy Heiland
Your Email Address: randy.heiland@gmail.com
Project Name: Scientific Workflow Integrity with Pegasus for nanoBIO
Short Project Name: swipnanobio
Field of Science: Neuroscience
Field of Science (if Other):
PI Name: Von Welch
PI Email: vwelch@iu.edu
PI Organization: Indiana University
PI Department: Center for Applied Cybersecurity Research
Join Date:
Sponsor:
OSG Sponsor Contact:
Project Contact: Randy HeilandProject Contact Email: heiland@iu.edu
Telephone Number: 812-552-6127
Project Description: Run Pegasus workflows (parameter sweeps + data analysis) on our nanoBIO simulation code, looking for data integrity failures.
nnmbl Your Name: Ahmed Akhtar
Your Email Address: a1akhtar@ucsd.edu
Project Name: Using Neural Nets to Understand the MBL Transition
Short Project Name: nnmbl
Field of Science: Computational Condensed Matter Physics
Field of Science (if Other):
PI Name: Ahmed Akhtar
PI Email: a1akhtar@ucsd.edu
PI Organization: UC San Diego
PI Department: Physics
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Sponsor:
OSG Sponsor Contact:
Project Contact:
Project Contact Email:
Telephone Number: 773 943 2236
Project Description: I will be using techniques in machine learning and AI to better characterize the transition between the many-body localized and ergodic phases of the random field Heisenberg spin chain. Numerically, this will involve generating many disorder realizations of this model and calculating their spectra, and analyzing the resulting data using neural nets.
gardnercrystal Your Name: Patrick Charbonneau
Your Email Address: patrick.charbonneau@duke.edu
Project Name: Gardner Crystal
Short Project Name: gardnercrystal
Field of Science: Physical Chemistry
Field of Science (if Other):
PI Name: Patrick Charbonneau
PI Email: patrick.charbonneau@duke.edu
PI Department: Chemistry
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Project Contact:
Project Contact Email:
Telephone Number: 919-613-6261
Project Descrip tion: Study the Gardner transition in crystals of polydisperse hard spheres.

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